Tpel013508.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411271.1:3316476-3341852[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9 1e+02 3.6 0.4 3 20 425 442 423 445 0.84 2 15 0.0023 0.13 12.8 0.0 1 23 456 479 456 479 0.97 3 15 0.3 17 6.1 6.9 1 20 606 625 606 626 0.95 4 15 0.018 0.99 10.0 3.8 2 23 672 693 671 693 0.95 5 15 0.00028 0.015 15.7 1.6 3 23 738 760 736 760 0.95 6 15 0.023 1.3 9.7 0.2 1 23 766 788 766 788 0.93 7 15 0.015 0.81 10.3 2.8 1 23 794 816 794 816 0.98 8 15 0.95 53 4.6 0.9 1 19 826 844 826 847 0.88 9 15 0.031 1.7 9.2 0.2 1 23 920 942 920 942 0.97 10 15 3.4 1.9e+02 2.8 6.3 1 23 949 971 949 971 0.95 11 15 0.00084 0.047 14.2 2.0 1 23 1020 1043 1020 1043 0.95 12 15 0.053 3 8.5 3.4 1 23 1050 1073 1050 1073 0.97 13 15 0.25 14 6.4 0.5 2 23 1091 1113 1090 1113 0.94 14 15 0.0038 0.21 12.1 2.1 1 23 1141 1163 1141 1163 0.97 15 15 1.4e-05 0.00076 19.8 1.2 1 23 1169 1191 1169 1191 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAGGAGCCTCCATTGATCCTCTGCATGGAGAATGCATCAGGTGAAGATGTAGCATTAAAAATACTACCAGAAGACGACTTCCAATCATTTCTGGACAAGGCAAAATCTCGCCTAGGTTTCGCTGTAGACTTAAATACAATAACAAGAAACGAAACAGTATCCCTAACGGACAATATTTACAAATTCCTAATGAACGCGGAAAATAATCCGCAAATAGAGTCCGCAGAATTGAACCTGGATATTTTAAAAGACAGTGGTAGTAGTGATTTTATTTACATGCTGGACGATGGCACCCAAATAGACGCCTCACAGATACAGTTCGAAAACGACGAACCAGTAATCGAGTTCAAAGTAAACGATCTGCCGTTCGTTAAGCGAAAAGACGACTCACTCGACGAAGAAGATGATTCGACAGAGAGAGAAACCGTAGTTTACAAAATACCAGGCTCCGTTTCTCGTAAGATTAAGAGTAGCAATCCGAAGACGAACTTCGCTAGCACACTACCTTTTAAGATGTTGAATTTTAAAGCGAAACAATTCGAAGCACAAACTGCACGTTATAATTTACATAAATTCCACAATAAAAATGTTAAAGTTAATGATAATAATAAGAAATTAAAAAACGAGTTGAGAGATCAAGTGCTTAATATAGTTAAAGATTCTGCTGTGGCTACGTTTAATGAAGCGAAAGAGGTGGATGGAAGAAGGAATGTGAGGAAATCTGATCCTTCAAGACCTGTAATCAAGAAGAATGATACACCAAATTCCGTGACAGAAATTAGTAAAAACGGTAGTGAATACTGCTTTATTTGTAAGAAATTCGTCGAGCGAACGGAAAAACTTTATATATTCGACAAAGATGATCAGAAGCTGCATAGATCTTTGCCGCAGAGTAAACAATCTGACAATTTAAAGGTAATTTGTGAAAACTGTCTGGAATCGAACTTCGAACTGGGTGTTATTGATAGTCCTGAAAAAACATTGGCAGAAAATGAATATTTAGTTATAAGGAACAACCAGCAGTATATATTCCATCGTATACAAGTAAATGAGGAAAATAATAAGGACGAAGAAAAAGACACTACAGAAGTTAATTCTAATTCTGAACCTGTAGTACTAACCAGTCCAAACAGAGTGGACATAAAAGGAGAACAAGAAGAGGTAGAGAAAGAAGCAGACACGATAGACGATTCTGCTATAGACAATTTAGAAGGAGTGAAAGAGTTTTTTGGAGAATATCAAATGGGCGTATCTAATGGGATGAATTGTCGGTTTTGCAAGAAAGAATTCACGGATATACAAGACGTGATGGAACATGGATTCGAGCACAAACACCAGACGGAGAACGAAGACGCGATATACCCTTGTCCACTATGTGATTATGGTTATGCGAACTATACTTGGTTGAAAGGTCATTTAAACGTCGCCCATGGAAAGAAAGAAACAAAAGAAGATGATCAGAAAGATGGAGATGAAAAAGATGATTCGCCTTTGAATAAAGAAGAGGTTTTAGAGAAGCCAATTTCGTCCCCAATAGCAACAAGGACGCGTAGTTCTAGCAGTAAAAAGAAGAATAGCGGTGACGTAACAGTTTTGGGTAAAGAAGAACAGAAAAAGGATGAAGAGTGTATGGCAAAGGTTGATAACATAAAAGTTGAAGTAAAGGAGGAACCTCTGGATGATGATGATGGTATATGGATATTGGAAGCCCAAGATGATCTGATGCAAGAGGAGAAGCTCGATGAGGAACTGCTGGATATTAAAATTCCAAAGAATTTGCAAAAAACTAAAATAAATTTGAAAGATACACATAAATGTAATACTTGCAAACACTTTTTCATATCTAAGGAAACATTGAAAGTTCACAAATGCCCCAAGAAAAATGTTAGAAAACGTAAAATTAATATTTACAAGGACGATGACCTTTATGAGCCTAATTTTGATGAATTATCCAAGAAACAACGCAGAAAACGCATTCGCGATCATCCGTGTGACCCTCAAATAGTAACGTGTAATCATTGTAATGAATCTTTCACATCAAAAGTCAGACTTAAGTTTCATATGCAATTCCACGAAACTAGCTGCACGTCTCTAACAAAAGAGAATAATTACAAATGCACGGATTGTGTTAGCAGCAATTTTGCAACGGAGACCGAGTTGTTCGACCACGTGCATTTCCAACATCAGAAACTTAAACGATGGCATTGTCCTGTCAAAGAATGCGGGAAAACTTTTTATTTACGCGCTACCCTAACGAAGCATAGTAGGACGCACACTGATACGAGGCGTTACGTCTGCCCCTCGTGTGGTAAAAGGTTTTTGGATAAACAAACATTGGACGAGCATGGCGTTACACATTTGAAGATAAAACCATTCGAATGTCACATTTGCATGAAACAACTAACGCGTCGGTCACGTCTCCGCATGCATCTGAGAGCGCACGAGGAGGCTCTATCGCCGGCCTTGGTTTTCGTTTGCTGCTTTTGCCAGAGAGCCTTCAAGGATCATATTGAAGCTCAGGAGCACGCGGCCTCGTCTGCTGAATGCATCGAGAAATGTAACCCTAATTTGAAACTATCTCCCACGACTGGATTGATTTATGAAAAAGCAGAAATTAAAGATACCGGTACAACAATACCATCAAAACCCAAAGGAGTGAATTATGAACCAAAAGATCAGAGGAAAGTTAACGAAATGATTAGTCTTATAAGCGATACCACCATGATTATTGTTGTTGAGATTGAGAAGGTGTTCCGATGCGAATATTGTGAGGACGTATTTTACCTGGAAGAGGCTTTAAATAAACATCGTGCAATTCACAAAGGCGTGAAGGAGCCGTTTATATGTCATATATGTAAAGTTACATTTCCCACTTATTCAAGGTGTACAACACACAAAACCACGCACGGCTTCTACAAACGCCCTCTAGCCGACGTCGTGAATGCAACAGACGAAGATAGCGTGAAGCAGCAAGAAGATGGTGGGAAGCGACATGAAAATATACCGGCGAGCGGAATTTTAGGCTACGGTGGCTTTCCTGTCGTTAAACATTTTCTTTGTGAGGATTGTGGTCGTTCATACCTGCACTGGACATATTTGCAAGTCCACAGACGCACTAAGCATCCTGGTAAAAGTATGACTTATGAATGTCAACAGTGCCATCTGACATTTCCTAACAGCTGGAGTGTTTCTTATCATAAAAAGAAGTTTCACGGCAAATCTCTGGCAAAACATGGCGCTAAGAAAACTAAAGACTTCTGGATCCCGTGCAGAGATTGTGAGGAGATTTTGCCAAACAAACACTCGCTTTATTTACACAGGAGTAAGGAACATTGTGATATATCTAATGAAAAAGATGAGACATATCCAAACAAAAATGACAAATCTCGCACCTGTGAGAAAGCGCGTCACAGATACTTCTGCCTCGTTTGCGGCCATTCTTTCCGTACTTTAACTTTGCGCACGGAACATCTACGTATACACACGGGGGAGAAGCCGTTTGTTTGCCAAGATTGTGGAGTGTCTTTCAGAAGATTGAGTACATTTCGTAATCATCGAGTGACTCACCTTCCCTTGGATGATACACCGAAGATAGTCACTGTACTTATCGAGGTACCGGGTTTGAATCCGACGGGTGAACAAATTAGGGAGCATTTGGTTAAGAACAAAATTAACGTTGCAAAAGTTGTTGATGTCTTCAAGATATCGTATAAACAGGGTGAACAAATAACTGTACCAAATAACGAGGAGGACTTCCAAAGAATAATGAAAACGAAAACTGAAGATATTAGTTTATGGAAAAAACAAATTATGAATTATTTTAATACTAAAACGACTAGTGATGAAAATAAAGAAAACAAAATACAAGCAGACAGGGGTTTCTCTCAAATGCATCGTCCTAACATCTTGCAGAGAAGTGGACCATCTGGATATCCGATTACTTTAAACATCACTGGCGAGGAATTATCAGACATTAATGTTCAACTGCTTCTGCCCGAAGGTGTATTGTTGAACGGATCACAAATGGTCCAGTTAAATCCTCATCATCAGATATTGCCGGAATCTGGAGAGTCTAATGTTAATCATAATGACGAAATTTAA
- Protein Sequence
- MEEEPPLILCMENASGEDVALKILPEDDFQSFLDKAKSRLGFAVDLNTITRNETVSLTDNIYKFLMNAENNPQIESAELNLDILKDSGSSDFIYMLDDGTQIDASQIQFENDEPVIEFKVNDLPFVKRKDDSLDEEDDSTERETVVYKIPGSVSRKIKSSNPKTNFASTLPFKMLNFKAKQFEAQTARYNLHKFHNKNVKVNDNNKKLKNELRDQVLNIVKDSAVATFNEAKEVDGRRNVRKSDPSRPVIKKNDTPNSVTEISKNGSEYCFICKKFVERTEKLYIFDKDDQKLHRSLPQSKQSDNLKVICENCLESNFELGVIDSPEKTLAENEYLVIRNNQQYIFHRIQVNEENNKDEEKDTTEVNSNSEPVVLTSPNRVDIKGEQEEVEKEADTIDDSAIDNLEGVKEFFGEYQMGVSNGMNCRFCKKEFTDIQDVMEHGFEHKHQTENEDAIYPCPLCDYGYANYTWLKGHLNVAHGKKETKEDDQKDGDEKDDSPLNKEEVLEKPISSPIATRTRSSSSKKKNSGDVTVLGKEEQKKDEECMAKVDNIKVEVKEEPLDDDDGIWILEAQDDLMQEEKLDEELLDIKIPKNLQKTKINLKDTHKCNTCKHFFISKETLKVHKCPKKNVRKRKINIYKDDDLYEPNFDELSKKQRRKRIRDHPCDPQIVTCNHCNESFTSKVRLKFHMQFHETSCTSLTKENNYKCTDCVSSNFATETELFDHVHFQHQKLKRWHCPVKECGKTFYLRATLTKHSRTHTDTRRYVCPSCGKRFLDKQTLDEHGVTHLKIKPFECHICMKQLTRRSRLRMHLRAHEEALSPALVFVCCFCQRAFKDHIEAQEHAASSAECIEKCNPNLKLSPTTGLIYEKAEIKDTGTTIPSKPKGVNYEPKDQRKVNEMISLISDTTMIIVVEIEKVFRCEYCEDVFYLEEALNKHRAIHKGVKEPFICHICKVTFPTYSRCTTHKTTHGFYKRPLADVVNATDEDSVKQQEDGGKRHENIPASGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRTKHPGKSMTYECQQCHLTFPNSWSVSYHKKKFHGKSLAKHGAKKTKDFWIPCRDCEEILPNKHSLYLHRSKEHCDISNEKDETYPNKNDKSRTCEKARHRYFCLVCGHSFRTLTLRTEHLRIHTGEKPFVCQDCGVSFRRLSTFRNHRVTHLPLDDTPKIVTVLIEVPGLNPTGEQIREHLVKNKINVAKVVDVFKISYKQGEQITVPNNEEDFQRIMKTKTEDISLWKKQIMNYFNTKTTSDENKENKIQADRGFSQMHRPNILQRSGPSGYPITLNITGEELSDINVQLLLPEGVLLNGSQMVQLNPHHQILPESGESNVNHNDEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -