Tpel015034.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411273.1:1402565-1409554[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.53 29 5.4 1.9 2 21 175 194 174 195 0.93 2 14 0.59 33 5.2 1.4 2 21 199 218 198 219 0.92 3 14 6.3e-05 0.0035 17.7 1.2 1 23 229 252 229 252 0.96 4 14 1.4 77 4.0 0.1 1 13 291 303 291 307 0.89 5 14 0.016 0.87 10.2 0.3 1 23 348 371 348 371 0.94 6 14 7.4 4.1e+02 1.8 0.1 2 22 577 597 576 597 0.90 7 14 0.27 15 6.3 0.5 1 23 645 666 645 666 0.93 8 14 0.046 2.5 8.7 0.2 5 23 722 740 719 740 0.92 9 14 0.0072 0.4 11.2 0.1 2 23 754 775 753 775 0.96 10 14 6e-07 3.3e-05 24.1 3.0 1 23 781 803 781 803 0.99 11 14 0.00014 0.0079 16.6 0.7 2 23 809 830 808 830 0.96 12 14 3.1e-05 0.0017 18.7 2.9 2 23 837 859 837 859 0.97 13 14 0.14 8 7.1 4.1 1 20 865 884 865 891 0.95 14 14 0.0002 0.011 16.1 1.8 3 23 897 918 896 918 0.97
Sequence Information
- Coding Sequence
- ATGAGTAAAAAACAGTTCAGAAAAAGTAGATTAATACCACGGAATGACTTCGAAGATTCTGAGCCGAAGCCAAACTGCATAATGTTCTCTGATTCACAACCCCGCCAGTGGACCGTGGAGGTGAAGGTAGAACCAGTAGACGAGAACAATGAAATAATTTTAGACAATGCATTTTCCGAGGATTTAATATTGAAGCAAGCTTTAGAGGCGGAGGCTGCGGAAATATCAAAAATATTAGAGCAAAGACAAACGAAAAACTCTAAGTTTGAAAATCTGCGTAAACAGCACGAGGATAAGTTTGCTAACTTTCTCTCTCGGAACTCCGACGATGGTACCTTAATAATAAGAAAAATGTACTGTGACATTTGCCGTTTAGAAATTAAGTTAAACATGCAAGTGTTCAGCGACCATCTTGTGGAACGACATCCCGATCCCAGAATTTTTGATTTGAAAGTGGAAAATGAAGTCGCAGTTGTCTATTTTAACATAGATAAAAATCAGAGTATACCTGAGGACGAATTAAAGTGCTTTACTTGCGACCAGGAGTTTCAGTATCGCTTCGCTTGGACGAAGCACCATATGAAAGATGAACAGGTTTGCACACTCTGCAGTTTGAGGTTTCAGAATTGTAAGGAACTGTTAGTACACAAGAATAACTGTACCGGAGTACAGTATTGCAGCGACTATAAATGCACGATTTGTTTCAAATTTTTCCGGAAAGCCAGCGATCTTGCCGAACATAAGTCTATGGTACATATTGTCAGATCGGACGCACTTATGCCTAATGTTCGACTCGCAGAATGTCAGCTCTGCAAACAAATGTATCCGGGTAACAGAAGTACACACTACTGCCCCGAGATGCCACACAAATTTGCCTGCAACAATTGCTTAAAAACCTTTCCGACTTCCTTAATGATCAAATGTCACAATAAAGCCTACAAGAGACGGAAAGGGGAGACCTGTACGCATTGCAAGAAGGTGCTGAAACGCGAATGCGAGATACTAAGCCACAAATGTGAGGTCTTGGACGAAACAATAATGTTTCAATGTCTACAATGCTCACGGAATTTTTCTAATAGAGATGGTGCGGTCAGTCATTTGACCGTAGAACATAAGTATAATGTAAACATGAATTTCGAAAAACTTCTTCTAAGGTACCAAATTAGTGCTGAACCAGAAGTCAAGCAGATAAATCAAACACAAACTTTACCAAAGCCTAAGAACTCGACAATGATCACACAAGTTGACGATTGCGAAGTGGTTATAGAAAATCCTCACGATGACCTGCAAAATGAAACCGCATCGTCTGCTCTTGTTCTGGCGCAACTGTTGAATGGAAACACAGACGACACTACAGCACGCAAACACGTTTATGTTACAAACAAGGAAGTTACTGATCTTGATTATAATCTTAAAGAGGAGCCAGTAAATATACTAGAGACAACAGACGACGATGACGATGTGGTGGTGATAGAACCAGAAATTCCACAGCCAATAATAATACCAGATGACGGGATGAGCGATGATATCTTTGTAACGGTTAAAACTGAACCAATGGAAGTAGACGAAAGTGACGACATAACAGCGGAACCAATCACAGAGGTCTGTGTCAACGATATAAAAATTGAGCCAATAGAGGAACGTTCCGATATGGTTATCTTGCATGAAAATGCTGATTTGTTGACAGTCTGCGGACATAAGGTTCAGAAGGATCGGCCGCCCAAATTAAAATGCCAACAGTGTTTAGCTAAGTTTGATTCGGTTCAGGACATGATCGAACATGTCCAGACGACCGGTTGCACCAGTTATCACTGCTCGTTCTGCGATTACATCTGCAAATCGATCGAAGAACACGAGAAACACCTCTTGCCGCACATCAAGATCTTTTTTAGTAAAGTAAAGATATTTGATGGCAAAAAAGAAATCAAAGCGTTCCAATGTATCATATGTACTAAGGTGGTGTTTCAAAAGAATCTTCAACGACATTGGATAGAGCATGTGAACAAGGATGTAACGACCGAAATTGGAAATTACGTTAAGAACGATTCTGTACCGGTTGTCAAAGTGAAGACTGAATCTGCGGAAAACGATATAGTTGGACAATTAATCGGATTCCTTTTGAAGAAGAAGAAAGGCATGAAGCTGGAGAATAGATTTTGCATCGTGTGCGAGAAAGGTGCGTCGCGTTCCAGCGATTTCAAACGTCATATTATAGAACATTTGTTGGACGATGCTCACAGGAAAAGTGACACGTTACTCGAGTGCCAGATTTGCATGGAGGCCTTGCCCAATCCGTCGTTATATAGGCAGCACATGAGAAAACATGGAGAGCTGCCGCTGTACCAATGCAGTTTGTGTTCAAAGTCATTCTCCGATTCCAGCAATTACACTAAGCATAGAAAAGTTCATAATGTCAGCGTGATGGTCTGCGATTTGTGCCAGAGGAAATTTAGCAGTAGACGGATGTTGATCAATCATATAGAGAGACACCGTCAAACGCAACCGGCTCAGTGCAAACTTTGTCCGCAAGTTTTTCCGTTCCAAACGAACTTGAACAGGCATATGAAGTCTTGCCACATGCAAATACCTAAATACATATGTCAGAAGTGTAAACAATCATTCTACACGCTCAAACACAAGTGGAATCACATGTGGTACCAGCATCATATACGGAAAGTCAAGGCTGATTGTCCGTACTGCAATGCATCTTTCCGGAGAAAGCACGACGTCAAAACTCATGTTAATAAAGAGCATGTTGGTATGCCGCAGCCTCCTAAGAGCTTCTTCTGTGAGATTTAA
- Protein Sequence
- MSKKQFRKSRLIPRNDFEDSEPKPNCIMFSDSQPRQWTVEVKVEPVDENNEIILDNAFSEDLILKQALEAEAAEISKILEQRQTKNSKFENLRKQHEDKFANFLSRNSDDGTLIIRKMYCDICRLEIKLNMQVFSDHLVERHPDPRIFDLKVENEVAVVYFNIDKNQSIPEDELKCFTCDQEFQYRFAWTKHHMKDEQVCTLCSLRFQNCKELLVHKNNCTGVQYCSDYKCTICFKFFRKASDLAEHKSMVHIVRSDALMPNVRLAECQLCKQMYPGNRSTHYCPEMPHKFACNNCLKTFPTSLMIKCHNKAYKRRKGETCTHCKKVLKRECEILSHKCEVLDETIMFQCLQCSRNFSNRDGAVSHLTVEHKYNVNMNFEKLLLRYQISAEPEVKQINQTQTLPKPKNSTMITQVDDCEVVIENPHDDLQNETASSALVLAQLLNGNTDDTTARKHVYVTNKEVTDLDYNLKEEPVNILETTDDDDDVVVIEPEIPQPIIIPDDGMSDDIFVTVKTEPMEVDESDDITAEPITEVCVNDIKIEPIEERSDMVILHENADLLTVCGHKVQKDRPPKLKCQQCLAKFDSVQDMIEHVQTTGCTSYHCSFCDYICKSIEEHEKHLLPHIKIFFSKVKIFDGKKEIKAFQCIICTKVVFQKNLQRHWIEHVNKDVTTEIGNYVKNDSVPVVKVKTESAENDIVGQLIGFLLKKKKGMKLENRFCIVCEKGASRSSDFKRHIIEHLLDDAHRKSDTLLECQICMEALPNPSLYRQHMRKHGELPLYQCSLCSKSFSDSSNYTKHRKVHNVSVMVCDLCQRKFSSRRMLINHIERHRQTQPAQCKLCPQVFPFQTNLNRHMKSCHMQIPKYICQKCKQSFYTLKHKWNHMWYQHHIRKVKADCPYCNASFRRKHDVKTHVNKEHVGMPQPPKSFFCEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -