Tpel002837.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411270.1:4957194-4959535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0034 0.19 12.3 1.0 1 23 149 171 149 171 0.98 2 14 1.8 99 3.7 8.2 1 23 176 199 176 199 0.96 3 14 1.1 63 4.3 2.1 1 19 204 226 204 229 0.85 4 14 0.00012 0.0069 16.8 0.7 1 23 231 253 231 253 0.98 5 14 0.15 8.1 7.1 1.4 2 17 289 304 289 305 0.90 6 14 0.00058 0.032 14.7 0.9 1 23 313 335 313 335 0.99 7 14 0.0049 0.27 11.8 1.4 2 23 345 365 344 365 0.96 8 14 0.00048 0.027 14.9 0.0 2 23 379 400 378 400 0.97 9 14 5.2 2.9e+02 2.2 0.3 8 23 411 425 405 425 0.77 10 14 0.57 32 5.3 6.0 1 23 436 459 436 459 0.97 11 14 0.00011 0.0062 16.9 2.2 1 23 465 487 465 487 0.99 12 14 8.9e-06 0.0005 20.4 1.5 2 23 494 515 494 515 0.98 13 14 0.9 50 4.6 0.5 1 23 521 544 521 544 0.92 14 14 0.00085 0.047 14.2 0.9 1 23 549 572 549 572 0.96
Sequence Information
- Coding Sequence
- ATGGCAGGAATAATAACAAAGAAAATAATAAATTATATGATAGACAATCATGATGTATGCGGCAGTTGTTTATGTAAAAGTGAAAAATTAGATAGATTGGACACCATTTATGTTATTGATAATAAACATTACACATTGAGCAATATTATGAAGTCTGTTTATGGATATTCTATTGACAATCAATTAGCAACACAAAACTTATGCAACAACTGCATAAATACAATATTAAAAGCATATCTTTTTATTCGAAACATAAAATTAATGAATGATATTTTAAAGAAAATATCTGAACAGATTGACATGAAAATTATCAATGAAATAGATTTTCAGGAATATGAAATTTCTGAAAAACCCATAAAAGAAGTAGTAAAAACTATAGAGGGCTCGATTGATGGGCCCCAAGCTGAAATTAGTAAAGTTAAAACAATAACGACTACATGCATTTATGAATGTGGTTTTTGCAATAATACTTTTAAAAAATATAAAGAAATCATATCACATATTAAAGTGCATAAAAATAATGACTTCCGATGCAAACATTGCTGCATGTCATTTCAAAAACTCCAATCTCTAATAAAACATAGAAAACAAACGCATACAGATAAAATTTATCATTGTAACATCTGTAATATAATTTTCCTTAGGAATATAAGAAGAAAACATTATTTAAAACGTCATAATAATTCGTTCTATGTATGTGATTATTGCGACAATGTATTATATACAAAAACATCATTAAAAGAACATATAAATAAACATTTGTATAGCAAAGACGAAAAAGCAAATTGTAATCAAAAAGTGGACCTCACCGATCACACCATAAAACATAAGGATGAATTAACTTGTAGTAAATGTCCAATGAGAAAATGTAAAAAATGTCATACGTTATTTACATCTAAGGACTTGTTAGAGCATTCTCAACTTTGTTCCTCGAGATATAAATGCGAGGATTGCGACGCAACTTTTTTATCATTAATTAACTATAAATATCATATAAGAAAACATAATAGGCCTACTCTAAAGAAGGATTCCGAATGTCTGTACTGCAACAAGCTATTCGATAAATATTCTATTAAAAGGCATATGAAATGGCATGCAAATGTACTCGTCAAGAAACCACCGAGAAAGGGAATACCGTGCGACATTTGCGGTACTATTTTAATAAATGAAAAATCGTTACAGAATCATATAGAAACGCATAAAGACCATGTCCGATGTGCAACATGCCTAAAATATATAAATGAGACTGACTACGAAAAGCATTTAAAAATTCATGTAAAAATTAAAAGTAGAAAAAGGAAAGATTTCCATTGTGCTAGATGCGATTATACTTCGAATTTTCACGATTGTTTAGAGGCGCATATTAACAGATATCATTTGAACATAAGACCTTTTAAATGTGAACAATGCGATAAACAGTTTTATGCAAAATCTACCATGAAAGAGCATGTTAAAACACATTTGCGGGTAAAACCTGAACAATGCGACATTTGCGGCCATACGTTTGTCAGTAAGAAAGCATTAAAGACCCATGTGCGTCTTCATACGGGCGAGAAACCTTACCCTTGCGATTTGTGCAGTGAAAAGTTTCTTTCGGCGAGTCGTAGACAAGCTCATAGAATAAGGAAGCACTTTGATCCAACTTTCCAATGTGATATATGCCTAAAAATGTACTATACTAAAAGTGCTGTTAGAATACATAAGAGAGATTCTCATTCTGAAAAAAAGGTTGACAAAGCAGACATGAAGACAAATGACAGCCTCCACTAG
- Protein Sequence
- MAGIITKKIINYMIDNHDVCGSCLCKSEKLDRLDTIYVIDNKHYTLSNIMKSVYGYSIDNQLATQNLCNNCINTILKAYLFIRNIKLMNDILKKISEQIDMKIINEIDFQEYEISEKPIKEVVKTIEGSIDGPQAEISKVKTITTTCIYECGFCNNTFKKYKEIISHIKVHKNNDFRCKHCCMSFQKLQSLIKHRKQTHTDKIYHCNICNIIFLRNIRRKHYLKRHNNSFYVCDYCDNVLYTKTSLKEHINKHLYSKDEKANCNQKVDLTDHTIKHKDELTCSKCPMRKCKKCHTLFTSKDLLEHSQLCSSRYKCEDCDATFLSLINYKYHIRKHNRPTLKKDSECLYCNKLFDKYSIKRHMKWHANVLVKKPPRKGIPCDICGTILINEKSLQNHIETHKDHVRCATCLKYINETDYEKHLKIHVKIKSRKRKDFHCARCDYTSNFHDCLEAHINRYHLNIRPFKCEQCDKQFYAKSTMKEHVKTHLRVKPEQCDICGHTFVSKKALKTHVRLHTGEKPYPCDLCSEKFLSASRRQAHRIRKHFDPTFQCDICLKMYYTKSAVRIHKRDSHSEKKVDKADMKTNDSLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -