Tpel002836.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411270.1:4953772-4956472[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.033 1.8 9.2 1.6 1 23 145 167 145 167 0.98 2 18 0.00028 0.016 15.7 1.3 2 23 224 246 223 246 0.95 3 18 0.026 1.5 9.5 6.1 1 21 255 275 255 276 0.94 4 18 0.00049 0.027 14.9 1.0 2 23 308 330 307 330 0.95 5 18 0.034 1.9 9.1 8.5 1 23 336 359 336 359 0.94 6 18 0.0065 0.36 11.4 0.3 1 22 363 384 363 384 0.94 7 18 0.0055 0.31 11.6 0.9 1 23 392 414 392 414 0.98 8 18 0.0022 0.12 12.9 0.2 2 23 418 440 417 440 0.95 9 18 0.052 2.9 8.5 1.1 2 23 445 466 444 466 0.97 10 18 1.2 67 4.2 7.7 1 23 472 495 472 495 0.94 11 18 0.00021 0.011 16.1 3.7 2 23 502 522 501 522 0.97 12 18 0.027 1.5 9.5 3.5 2 23 540 561 539 561 0.96 13 18 0.049 2.7 8.6 0.2 2 23 566 586 565 586 0.96 14 18 3.1 1.7e+02 3.0 1.4 2 23 597 619 596 619 0.92 15 18 0.011 0.61 10.6 4.2 1 21 625 645 625 647 0.96 16 18 0.0015 0.084 13.4 2.7 2 23 656 677 656 677 0.98 17 18 0.00055 0.03 14.8 1.0 1 23 683 706 683 706 0.97 18 18 0.0062 0.34 11.4 0.1 2 23 712 734 711 734 0.96
Sequence Information
- Coding Sequence
- ATGGAAGATTATTTTAAATGGAAAAAGAAATTAAATACCGTTTTACATACAACACGCTATTGTGGTATTTGTTTGGAAGAGAGCAATAATCTATTCGATATCGAGGCAACTGTTAGTATAACTGAAATAAGCCGAAAGTATGAAACAACTTTTCAAGATATACTTTCTACGTTGTGTTCCAGTTATAGTTCATCAATATTCGCCAGCAACTTCCTATGCGAGGATTGCGCAAGATTATCAATCCAATTAACAATATTCATTAGTAAAATCAAAACATCAGCAAATATTTTGCAAACGTGTTTAAAAAATATAGAAGACAATGTTGAATATACTTTCAACACTATACATAATTTAGAAAATTATGAAAAATCGTTAATTTGCTTTGATTTGAGACAGATAATTGATGCACACAAGGAGACCAGGGAACAACTTTATAAATGTCAAATATGCCGTTTAGAATTTTGTGATGAAGAAATTTACAAAACTCATATTAATATACATAAAAATGCTAAAAATGAAATCGTGAAAATTCCAATGAAACCGATTGAGCCACCCGAAGAAGTATTGAACCTAGAACACGTAGACGAGACAGAATGCGAAGATTGCAAGACTTGGGTTAAAAATTCAGAGTTTGATCAGCACAAAAAACTTCACGAACAAAGAACTTGGCATTGCAGCGTTTGTGACAAAGTTTTTTATAGTGTAAGCAGTTTCACGACACATTTAATAATGAAACACAACATAATATCTAAAGACTCGATCTTTTCCTGCAAACTGTGTTATAAAAGTTACTTTACAAAATCTACTCTTAACACCCACAAATGTAAATATCGTTGTTCTGAATGCGAGGAAGTGCCTTGTCACCATGAAGAGTATCTTTTAAGTTATCGCAACCAAAGGGAAGCAGGTCTAAATGCCGTCCAATGTCCCAAATGCGATTATAAATGTCCAAGAAAAACCAGCCTCATATCTCACGTGAATCTCGATCACTTGAATTTATTCAATCATTTCTGTAATGAATGCAATCAGAGTTTTCATTCGAAACATTCTCTGATTCAACACAAATTGAAATTTCACCAAGAAGCTCACGTTTGCGAGTATTGTGACGAATCTGTTAAGGGGAAGGTGAATTTTTTGACCCATCAGAGTACCTGTAAGGATATAAGACGTGCTTTTCAATGCTTTCAATGCGTCGCTACATTCAATGACGAAGAAACCTTATCTGAACACACGAAAAAGCACTTATTTATTTACTGTACAGTTTGTAATAACCAATTTAATAGTGAGGAAAAACTTAACATTCATATAAGGGAAGACCATAAAACTAAAATATCTTGTTCTATGTGTTTAGAAGATTTTCATACACAAGAAGAATACTCGTCACACATAACGACACATCCGGTAAATTCAAAACATATATGTCGACATTGTAAGATGACTTTCAATTCAAAATTCAATCATCGTTCACATATAATGAATGTGCATTCCGCTGCGGGCAAAACTACTTGTAACATCTGCGGGAAAACGTTCAGTAAATGCAATTTAAATTATCATTTACAGAGCCATTCCAAAGATAAATTATCAAGGAAGAAAGTTAAGCATGTAAAACAAGTTTGTAAATGCGAACTCTGCGGTAAATGGTTCTCCTCTATTAAAGTACTAAAACGGCACAAACAGAAGCACAAAGAGGAGACCCAATGTGAAATTTGTAAGAAATTCCTACGCCCCATTAACATGGAAGCTCATTTACTAAGCCATACAAACAGAACATTGGGTCGTAAAAAGTTAAAATGTACCCAATGCGATTATGAGACTAATTACCCTTTATGTATGGATGCACATACGAACAGAATGCACACTAAAGTGAGGCCATACAAATGTACGATATGTGAAAAAGGCTTTTACGGTAAAATTACTTTACATGAGCATATGAAATGTCATACTGATACGACAGTCACAGGTCGACAATGTGAGCTTTGCGGTGATTATTTTTGCAATAGTTTTTCTTTGAGGACTCATATGAGATTACACACAGGTGAAAAACCATACTCTTGTAACGAATGTGGGGAAAAATTTATATCGTCAAGTCGTAAAAAAGAGCACATTTTGAAGCGACATACGACGCCTAATGTACCTTGTCCGATATGTAAAAATATGTATTATTCTGCAAGGGATGTGCGGGCGCATATTAAAAAGATACATTTCAATATAAAGAAGGGTGAAATCGACATGTCTCAGTTACATCTGTCTGAAAAAGATATGTATATCTTCAAAGATAAAAGGGTTCTTTAA
- Protein Sequence
- MEDYFKWKKKLNTVLHTTRYCGICLEESNNLFDIEATVSITEISRKYETTFQDILSTLCSSYSSSIFASNFLCEDCARLSIQLTIFISKIKTSANILQTCLKNIEDNVEYTFNTIHNLENYEKSLICFDLRQIIDAHKETREQLYKCQICRLEFCDEEIYKTHINIHKNAKNEIVKIPMKPIEPPEEVLNLEHVDETECEDCKTWVKNSEFDQHKKLHEQRTWHCSVCDKVFYSVSSFTTHLIMKHNIISKDSIFSCKLCYKSYFTKSTLNTHKCKYRCSECEEVPCHHEEYLLSYRNQREAGLNAVQCPKCDYKCPRKTSLISHVNLDHLNLFNHFCNECNQSFHSKHSLIQHKLKFHQEAHVCEYCDESVKGKVNFLTHQSTCKDIRRAFQCFQCVATFNDEETLSEHTKKHLFIYCTVCNNQFNSEEKLNIHIREDHKTKISCSMCLEDFHTQEEYSSHITTHPVNSKHICRHCKMTFNSKFNHRSHIMNVHSAAGKTTCNICGKTFSKCNLNYHLQSHSKDKLSRKKVKHVKQVCKCELCGKWFSSIKVLKRHKQKHKEETQCEICKKFLRPINMEAHLLSHTNRTLGRKKLKCTQCDYETNYPLCMDAHTNRMHTKVRPYKCTICEKGFYGKITLHEHMKCHTDTTVTGRQCELCGDYFCNSFSLRTHMRLHTGEKPYSCNECGEKFISSSRKKEHILKRHTTPNVPCPICKNMYYSARDVRAHIKKIHFNIKKGEIDMSQLHLSEKDMYIFKDKRVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -