Basic Information

Insect: Tinea pellionella
Gene Symbol: -
Assembly: GCA_948150575.1
Location: OX411273.1:3254229-3263974[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00031 0.017 15.5 1.1 1 23 222 244 222 244 0.98

2 12 0.077 4.3 8.0 2.3 1 23 251 274 251 274 0.94

3 12 0.35 19 5.9 0.5 1 23 278 300 278 300 0.95

4 12 0.024 1.3 9.6 2.5 1 23 305 328 305 328 0.89

5 12 0.031 1.7 9.3 2.8 1 23 332 355 332 355 0.96

6 12 0.028 1.6 9.4 0.1 2 22 362 382 361 385 0.86

7 12 0.0035 0.2 12.2 1.6 3 23 413 433 411 433 0.96

8 12 1.8 1e+02 3.7 1.7 2 23 439 461 438 461 0.88

9 12 2e-05 0.0011 19.3 0.8 2 23 476 497 475 497 0.97

10 12 9e-06 0.0005 20.4 1.5 1 23 503 525 503 525 0.99

11 12 4.1e-07 2.3e-05 24.6 3.3 1 23 531 553 531 553 0.99

12 12 8.7e-05 0.0048 17.3 2.3 1 23 559 582 559 582 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00031	0.017	15.5	1.1	1	23	222	244	222	244	0.98
2	12	0.077	4.3	8.0	2.3	1	23	251	274	251	274	0.94
3	12	0.35	19	5.9	0.5	1	23	278	300	278	300	0.95
4	12	0.024	1.3	9.6	2.5	1	23	305	328	305	328	0.89
5	12	0.031	1.7	9.3	2.8	1	23	332	355	332	355	0.96
6	12	0.028	1.6	9.4	0.1	2	22	362	382	361	385	0.86
7	12	0.0035	0.2	12.2	1.6	3	23	413	433	411	433	0.96
8	12	1.8	1e+02	3.7	1.7	2	23	439	461	438	461	0.88
9	12	2e-05	0.0011	19.3	0.8	2	23	476	497	475	497	0.97
10	12	9e-06	0.0005	20.4	1.5	1	23	503	525	503	525	0.99
11	12	4.1e-07	2.3e-05	24.6	3.3	1	23	531	553	531	553	0.99
12	12	8.7e-05	0.0048	17.3	2.3	1	23	559	582	559	582	0.96

Sequence Information

Coding Sequence: ATGGAAGAAATATATGCCTGCCGATTATGTTTTGCTACAGACGTCAAATTATTTAACGTGCACCATGCAAATTTGTCTGAAAACACGAAAAATATATTTGGTTTAAATATGTCAATAATGGATGCTTTACCACCATATATATGTTATCTATGTAACAATATAATAAATAAATATGTTGTTTTTATGAATAAATGTAAATTGTCACAAGATTTATTACAAGAATATATGGATAAGTGTCAAACTGTAACTTCTAATGTACTCTTAGATATACATAATAAAATTAAACAATACAATTTTTGCAAAACAAAAACATCAATTACAGATGTCTTTATAGACAAATATATGGAAATTGATGTTAAAAATCAATCAAAATTATTTGATGATGAGGCAGTACCAGAGGATGATGTGTGGCCATCATCAGATGTGCAAAATGATTCTGAGTTAATCAATGATACCAAGGTTAATGAGCATAAAATTAAAATAGAACAGGAAGTAAGTGACGATGAGAAGCCCCTAGTCGAGATTAGGAACACGAAAACTGTGAAGAAGCCAAAGAAGAAATGTTTCGAAGAGATCTTCGCGACTGTCAGGCATTTGTCGAAGGAGGAGCAGAGGCGAGAGATTGAGATGAGAAAGAGTTCGCTGAATTATTTAAACAGCCCTTTTAAATGTGAGATCTGTTTCAAAGGTTTTGTTGAGAAGAAGCCGTACAATAATCATATGTTACGGCACGCTGTGAGCAGCGGTGAATATCTGTGCGACATATGTTATGTGAGATGTGACACGAAGACCAAGCTGAGGACCCACGAGATCACCAACCACGAGAAGAAATTCGCTTGCAATCAATGCGAAGTCACTTGCAACACTGCTGCCAAGGCGAGAGAACACGAAAAATGGCATCGTGGTCACACATACATCTGTAAATATTGCGGGGAAACATTCAAAAAAGTGACTACACATTTAACGCATGTCCGAATTCGTCATCCGAGCGATTTTATTTGTGACATGTGTGGCGAATCGTTCCTTTCTGAGCATGGATTGCATACGCATAAGAAAAGGATGCATCGAGATGAGCAATTAACAACCTGTGACCCATGCAATATCGTATTCAAAACGTTGGATGCGCTCAACAATCATAATAAAATTGGAATACATAGCGAGAGTGGCAGACATTTCTGTGTGATAGCGGGCGGGGGTGGGGGTGTAAAAAAGTATGTACATTACAGTAGTACGGCGTGCCGTGATTGCGGTGAACATTTTGGAACTTGCGATGAGTTGATAGAACACAAGAAGGCGCACGATGAAGAGCTGACGCGGTGTGAGGAGTGTAACGCCCAATTCCCGACGCCGAGGAAGTGCGCGGACCATTTTAAAAGGATACATCTCGGCATAAAGTACGTCAAGAATAACATGTCGAAGAATATTGTCTGTGAAATTTGCGGCAGGAGGTGTATGTCAAATGCATCATTAATAACCCATCAGAggactcatacgggtgagaagccgtaccaatgcagtttgtgtccgaaacggttcagtgtccaacaacggctgcagatccacactcggacacacaccggggagaggccctacacctgcCAGCACTGTCCGAAGGCTTTTAGGCACAAACCTGCTCTGAATAGACATTTGAGGGTACACTCTGGCGACAAACCGTACACCTGCATCTATTGCGGTAAGTCCTTCTCACAGTCGAACTCTATGAAACTCCACATCCACACGGTCCATTTGAAGTTACCACCGCCTTATAGAAACAAGGGTAAACAGTAA
Protein Sequence: MEEIYACRLCFATDVKLFNVHHANLSENTKNIFGLNMSIMDALPPYICYLCNNIINKYVVFMNKCKLSQDLLQEYMDKCQTVTSNVLLDIHNKIKQYNFCKTKTSITDVFIDKYMEIDVKNQSKLFDDEAVPEDDVWPSSDVQNDSELINDTKVNEHKIKIEQEVSDDEKPLVEIRNTKTVKKPKKKCFEEIFATVRHLSKEEQRREIEMRKSSLNYLNSPFKCEICFKGFVEKKPYNNHMLRHAVSSGEYLCDICYVRCDTKTKLRTHEITNHEKKFACNQCEVTCNTAAKAREHEKWHRGHTYICKYCGETFKKVTTHLTHVRIRHPSDFICDMCGESFLSEHGLHTHKKRMHRDEQLTTCDPCNIVFKTLDALNNHNKIGIHSESGRHFCVIAGGGGGVKKYVHYSSTACRDCGEHFGTCDELIEHKKAHDEELTRCEECNAQFPTPRKCADHFKRIHLGIKYVKNNMSKNIVCEICGRRCMSNASLITHQRTHTGEKPYQCSLCPKRFSVQQRLQIHTRTHTGERPYTCQHCPKAFRHKPALNRHLRVHSGDKPYTCIYCGKSFSQSNSMKLHIHTVHLKLPPPYRNKGKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -