Tpel015001.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411273.1:983295-993657[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.04 2.2 8.9 2.1 1 23 176 198 176 198 0.98 2 11 5.9 3.3e+02 2.1 4.4 2 23 206 227 205 227 0.96 3 11 2 1.1e+02 3.6 0.5 1 23 231 254 231 254 0.85 4 11 2.1 1.1e+02 3.5 1.9 2 19 262 279 261 280 0.94 5 11 0.01 0.57 10.7 1.7 2 23 291 313 290 313 0.95 6 11 0.00014 0.0078 16.6 0.4 1 23 326 348 326 348 0.94 7 11 4.4e-05 0.0025 18.2 0.3 1 23 354 378 354 378 0.91 8 11 6.1e-05 0.0034 17.8 0.9 1 23 386 409 386 409 0.97 9 11 4.1e-05 0.0023 18.3 2.6 1 23 415 438 415 438 0.98 10 11 3.7e-06 0.0002 21.6 1.1 2 23 448 469 447 469 0.97 11 11 6.9e-06 0.00038 20.7 0.7 1 23 475 498 475 498 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAAGAAGTGTATATCGCCTCAAAACCTAAAATATGTGAATGTTGTCTCTCCCAAAAACAAGATATCATCTTAACAAATTATCACATACAAAGTGACGAACTTAAAAATATAATTAAGGTCGACGAAGTGCAATTGTGTCCAAACTGCGTAACTTTAGCCCATGACGCAGATACTTTTGTACAAAATGTAAATAAAGCTAAATTAACCGTCTCCGAGATGTGCAACTCAGCAATAAAATTAGAAATAGAGGAGGTGATTAAAAATGAAATTGAAACGAAGGAAGAGGATAGAAATATTAAGATTGAAATTGAGGATATGTTGAATAGAGATGACCTAATCGAGTCTGATCCTCAAGATGATTCCGTAATTGTTTACAACTCCAAATTACAAATAGACTTGAAAAGTGAAGACAGAACAGACGGACAAAATGAGAAAGTGGAAACGATATACCTGAATAATAAAGAGTTGAAGAATATCAGAGAGATCATGTTGACTGATAAAAATTTTCTCGAGGGCAAATATAAGTGTTACGACTGTATCAAGTACTATGCCCACGAGGAGACGTATGAGAAACACATGGCTAACCATAGTAAGGAGGCTGGTGAATTGAAATGCGAAATTTGCAAGCAAAGACACAAGACTGCCGAAAAATACGACACACATAAGAAGAAACATTTTAAATGGTACAAATGTACATTGTGTCCCACAATGAGGATGACGCGTGAAGTTATAGTGCAACACTACAATTCGACCCATACGGACTTTAAGAATGACTGTTACTGTTTAATTTGTAACAAATGGCTGAAAAACAGCAAAGGGCTCCGTAAACATAACTGGTACAAACACAGCGGTTTTAAGAGAATAAAATGTGAATATTGCAATAAGGAATTGTCCGATTGGAAATGTATTAGAACGCATGTTTTGAGTAAACACCCAGAGAAGAGTAATTGTCCGTTACCCGAGAAGGATCATATCTGTCTTGATTGTGGGAAAGGATTCCCCACGAAGGGTCGTTTGAAAGCACATTCGATATCACATTTTAATAATAAGGAATTCTATTGCGTCGAATGCGATAAAGGTTTCAAATCCCGTCCGATGCTACAGGCACATTTGAATTCAGGCAAACATATGAGATATAATGAATATAGATATGTATGCGAGAAGTGCGACAAAAGGTATATTACTAAAAGAGCTCTAGATTCGCATTACAACAGGGAACACTTGAAAATGAGACCTTATCAATGCAAAGAGTGCGACAAGTCTTTCTTCATCCAAACAAGATTGCAGCACCATATCAAAGTTGTTCACGAAGGTCGGAAGCCGCCACAAAATATCCCTTGTAGTATATGTAATAAATTATTTAGGACCAAGAATACGttaagagaacatctcagaactcatactggcgaaagaccttacgagtgtaagatttgcggttcaaagttcacgcaatccggcgttttgaggacgcatcagaaAACTGTTCATTTGAAAGTTAATAGAAAAACAAAATTATGTGAAATTGAAGCTAAATTACTTTAG
- Protein Sequence
- MEEEVYIASKPKICECCLSQKQDIILTNYHIQSDELKNIIKVDEVQLCPNCVTLAHDADTFVQNVNKAKLTVSEMCNSAIKLEIEEVIKNEIETKEEDRNIKIEIEDMLNRDDLIESDPQDDSVIVYNSKLQIDLKSEDRTDGQNEKVETIYLNNKELKNIREIMLTDKNFLEGKYKCYDCIKYYAHEETYEKHMANHSKEAGELKCEICKQRHKTAEKYDTHKKKHFKWYKCTLCPTMRMTREVIVQHYNSTHTDFKNDCYCLICNKWLKNSKGLRKHNWYKHSGFKRIKCEYCNKELSDWKCIRTHVLSKHPEKSNCPLPEKDHICLDCGKGFPTKGRLKAHSISHFNNKEFYCVECDKGFKSRPMLQAHLNSGKHMRYNEYRYVCEKCDKRYITKRALDSHYNREHLKMRPYQCKECDKSFFIQTRLQHHIKVVHEGRKPPQNIPCSICNKLFRTKNTLREHLRTHTGERPYECKICGSKFTQSGVLRTHQKTVHLKVNRKTKLCEIEAKLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01453502;
- 90% Identity
- -
- 80% Identity
- -