Tpel014989.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411273.1:786082-798494[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0038 0.21 12.1 2.3 1 23 306 329 306 329 0.97 2 12 0.037 2 9.0 0.1 2 23 339 360 338 360 0.96 3 12 0.07 3.9 8.1 0.3 1 23 364 387 364 387 0.96 4 12 0.00055 0.031 14.7 2.4 1 23 392 415 392 415 0.94 5 12 0.067 3.7 8.2 1.7 2 21 420 439 420 440 0.91 6 12 0.00021 0.011 16.1 1.3 2 23 456 477 455 477 0.93 7 12 1.7e-05 0.00092 19.5 0.1 1 23 482 504 482 504 0.98 8 12 0.00053 0.029 14.8 3.5 1 21 513 533 513 534 0.96 9 12 0.0017 0.094 13.2 1.8 1 23 546 569 546 569 0.89 10 12 0.02 1.1 9.8 0.2 1 23 575 598 575 598 0.93 11 12 0.016 0.88 10.2 0.3 3 19 610 626 608 627 0.89 12 12 0.0036 0.2 12.2 1.4 1 23 640 663 640 663 0.98
Sequence Information
- Coding Sequence
- ATGAATGAAATTAATATAAATATAGAAGGGTTCAATGTGAACGGAATTTGCGTTGGTTGCTTAAACCATGGTCGTAAGATGTTTTATTCCAGTAACGTGAAAGAATGCTTTCGTGTTTTGGGAAATATTGAGGTACCAGATGGACTAGTAATCCAGGTCTGCTGGGAATGTATGAGTGTTATAAATAAAATATGTAATTTTCAAAATATGATACAGAAATCTTTTTGCATTTTGAACGAGTATTCAAAAAAGCATACATTCCTGAATTGTCCACGTGATCTGAGTCAGCATGCCACTACGACATTGCATACAACGGAACTGAAGCATGGAGAAGATTTTCACGAGGAATATTGCAAAGTTGCAGACGACGACCCGGAGAAGTTAATAATTAATAGGATACCAATTAATATAGAGAGAAAGGGAGCGAAGAAACAATTGAAGAGGCTCGGAAAGAATAAAAATAAACATTATTTAAAAGATATTATTCGGAAAATGGCTGAAGATACGAATGAAATTTTAAATATTTTCTCGGACAAGGATCGTAGTGTCGAGGTAGAGGTGGCAATGACTGATGAAGAACCTCGACCGCAGGTTAAAGATGAAGATCAAATTATGGATTTCGAAGCAGTTGATGATAACTCTCAAGATGAATGGGATCATATGGACTTCGTTGAGGAGAATTCGGTGTCGTCGGAGGACGATATGAAATTATCAAAATTAAAAAAGAAAAAAGATAGAAGTCATCTCAGACGTGATAAGATGATGCAGCCGGTGGGAGAGTCTGACGAGCCTAGGATTCTTAAGAAGGCAAAAAAGTTACCTAAAGATAAAGTAGAAATAATAATTATGGACGACGAGAAAATGCTAGAAATAAGGAAACGGGACGAAGAGAACGAAGATTTTCTCAAATATAAATATAGATGCCACGATTGTCTGTATGTATTTAACACATCGAAGATATTAGAGATGCATATGGAGAGAAAACACAAACCAATGAAAAAGAAAGAGCAATCAAAATGTGACATTTGCAATGCACTTTATATCAATAAAGACAGTATGGCGGCGCATCGTCTGAATCATTATAATGGCTTTAGATGTAAGATATGCGGATTCGAGACTGGCGTCGCGAAAACTATGCTCTCGCATCTGAATCGTTTGCACGATCATTTGAAGTTTCAGTGTTTGTTGTGCGACGAAAAGTTTAGTTCAAAAAGCAAGTTGGTTTACCATCAGGGCGTGTGCCATAAGGAGCGACCTCAATGCGATTGCTGTGGTAAAGTTTTCGCTAACGAAATGACTTTGAAATATCATAAGAAAAAATTAACTCAGAAATGTGAAGTGAAAATACAGGAAGACGTCGAAATTAGATGTAAAGGATGCGGGAAAATGTTTCATTCGAAAAAGAGTTACAGAGCTCATGCAGTTATACACGAGGGTTTGCAATATCCGTGCCCTATATGTGGTAAAATATTCCAATGGAAACGTAACTTGGCCAGACATATAAAGAACCACTCTGAGAAAGACACCGGCCTCTTCTACGAGTGTAAGCCGTGCGGGAAACGTTTCTCCAGCAAGGATTGTTTTAATAACCATATGAAGTTTAGCAAGAAACACGTGTCCGAGGATAATTATACTCACGAGTGCAGTTATTGTGGCAAAAAGTTCCCAACTAAATGGTGTATGGTCGATCATGTCGATTGGGACCACTTGGAGAAGATCAAATATCAATGTCAGACGTGTTTAAAGGCGTTCAAGACTGCAAAAATCATGGTCGCACACATCAACAATATACACGGTGGTAAGAAGGAGCCAGAGGGTGAACATTTGTGCGATATATGCGGAAAATCATATACGACCGTGAAACGTTTGAAGGGCCACGTGTGGGCGATGCACACGCACAGGTCGACGAACAAGACTTACAAGTGCAAACAGTGTCCTGCCACGTTCACATGGCAGACCTCAATATACAAACACATGAAGATGATGCACGACAACGGCAGGAAGAAGATATTACCGTATGGTGTCGTCGGAGTGACCAAAAACAAACCTGAACCGCCGTCTTTAACCGCTGCTAATATCGATATCGCCAGGATATACCTCCAACCGGGACCGAGCGTCGAATTGATTAGCACCGATACTATAAAGTGA
- Protein Sequence
- MNEININIEGFNVNGICVGCLNHGRKMFYSSNVKECFRVLGNIEVPDGLVIQVCWECMSVINKICNFQNMIQKSFCILNEYSKKHTFLNCPRDLSQHATTTLHTTELKHGEDFHEEYCKVADDDPEKLIINRIPINIERKGAKKQLKRLGKNKNKHYLKDIIRKMAEDTNEILNIFSDKDRSVEVEVAMTDEEPRPQVKDEDQIMDFEAVDDNSQDEWDHMDFVEENSVSSEDDMKLSKLKKKKDRSHLRRDKMMQPVGESDEPRILKKAKKLPKDKVEIIIMDDEKMLEIRKRDEENEDFLKYKYRCHDCLYVFNTSKILEMHMERKHKPMKKKEQSKCDICNALYINKDSMAAHRLNHYNGFRCKICGFETGVAKTMLSHLNRLHDHLKFQCLLCDEKFSSKSKLVYHQGVCHKERPQCDCCGKVFANEMTLKYHKKKLTQKCEVKIQEDVEIRCKGCGKMFHSKKSYRAHAVIHEGLQYPCPICGKIFQWKRNLARHIKNHSEKDTGLFYECKPCGKRFSSKDCFNNHMKFSKKHVSEDNYTHECSYCGKKFPTKWCMVDHVDWDHLEKIKYQCQTCLKAFKTAKIMVAHINNIHGGKKEPEGEHLCDICGKSYTTVKRLKGHVWAMHTHRSTNKTYKCKQCPATFTWQTSIYKHMKMMHDNGRKKILPYGVVGVTKNKPEPPSLTAANIDIARIYLQPGPSVELISTDTIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -