Tpel004844.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411272.1:1362719-1368431[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.011 0.63 10.6 2.9 1 23 110 133 110 133 0.96 2 17 2.5e-05 0.0014 19.0 1.9 3 23 150 171 141 171 0.96 3 17 0.011 0.58 10.7 0.7 2 23 202 224 202 224 0.97 4 17 0.00072 0.04 14.4 1.1 2 23 231 252 230 252 0.96 5 17 0.0026 0.15 12.6 1.4 1 23 258 280 258 280 0.98 6 17 9.5 5.3e+02 1.4 0.3 1 21 306 326 306 329 0.73 7 17 0.0016 0.086 13.3 3.3 1 23 342 365 342 365 0.98 8 17 0.21 12 6.6 1.4 2 23 369 390 368 390 0.90 9 17 3.4 1.9e+02 2.8 0.2 2 23 396 418 396 419 0.87 10 17 0.036 2 9.1 0.4 2 23 425 446 424 446 0.94 11 17 9.9e-06 0.00055 20.2 3.8 1 23 452 474 452 474 0.98 12 17 0.041 2.3 8.9 1.0 1 23 500 523 500 523 0.96 13 17 0.0012 0.064 13.7 1.4 1 23 535 558 535 558 0.96 14 17 0.073 4 8.1 0.8 2 23 589 611 589 611 0.97 15 17 0.00051 0.028 14.9 1.7 2 23 618 639 617 639 0.96 16 17 0.0012 0.068 13.7 4.1 1 23 645 667 645 667 0.98 17 17 0.00023 0.013 15.9 0.3 3 23 675 695 674 696 0.94
Sequence Information
- Coding Sequence
- ATGAAAAGGGCGTCCGATCTACCTAAGATGGCAGTGAGGCTGCATTTCTTCGTACATCTGGCTAAGGAAACGTCGGCAGAAAAGAACATCACGCAAGGGGTCTCTCAAGCTGCCTGTCTCCCGCGCTCACCGACGACTTCACAATTCTTGCCGGGCATCTTGGCTAGGGCATCGAGTATTATAAGATATCGAAGTAACCGTGTACTACCGGCACTGGGGGATAACTCCAATAACGCTTTACGCTACGCTACAGTAGACAAAATTTCAACAGCAGATTTAACAGAACATTATAAAGTAATACTCAACGAGAGGACTGGTAAAAACGAATACTTTTGCCCTAAATGCGAAGCGTTTCTGAGCCATAAGGAGACAATGAAACAACACATACGAAATTTCCATTTAAAAGAACAAATGAGAAATAATGAGAAATCTTTGAACAAGCATCTTTGTGATATATGTTCTAAGTACTTTTCCACTAAGTTTAACTTACAATATCATATTAAAATGGTGCACCTCTTGACTTCGTGCGAGATTTGTGAAGAGAAGATATCTTATCCTAAATTACCATATCATATGAACGAGGCGCATGATACTCCGATACCGACATGCGGCATTTGCGGCTTTAAATCATCTAGTGAAAGATTAATAAATAAACATCAAAGAAGAGTTCATATGAAAGAACGAAATGTATCATGCCCGTCTTGTGATTTGAAGTTTTTTGATACGTCGCACTTAAACATACATTTGGAGAAGCATACGTTGCAGAAGTGTTTTGAGTGCCAACTTTGTCATAAAAAATTTCAGTGGCGTTCTTCTTTAGCGGCTCATGTAAAAATTCATACCGAGAAAATTCCAACAGCAGATTTAACAGAACATTATAAAGTAATAATCAACGATAAGACTGGTGAAAATCAATACTTTTGCCCTAAATGCCGGTTATTTCTACGCAGTAAGATCATAGCAGAAAAACACATACTAAATGTCCATTTGAAGGAACAATTGAAAAATAATGAAAAGGACAAATATTATTGTGATATATGTTCGAAGTATTACAGTTGTAAGGCGAATTTGCGTAATCACATTAAAAGGGTTCACCTCTTGAGCTCATGCAAGATTTGCGGAGAAAAATATTCTTTTATTAAATTAAAATATCATATGCACGAGGCGCACGGCGCTCCGATACCGACATGCGGAATTTGCGGCCTTAAAGCATATAAAGAAAGCATAGTGCGAAGTCATCAGAGAAAAGTTCATATGAAAGAAAAAAATGTGTCATGCCCTTCTTGCGATTTGATGTTTTTCAATGGGACTGATTTAAACAAACATTTTGTTAAGCATACGAATGTAAGGGACTTTCAGTGCGAATTTTGTCATAAGAAATTTCGGAGGCAATCTACTTTGGCACTTCATTGGAAAATTCATACTGGCAGAATTCCAACAGCAGATTTAACAGAACATTATAAAATAATAATCAACGAGAAGACCGGTAAAAATCAATACTTTTGCCCTAAATGCCAGTTGTTTCTACGCAGTAAGAACACAATAGAAAATCATATACTAAGTCGTCATTTGAAAAATAGTGAGAAGCCACTCGTGAAGGAGTATTATTGTGATATATGTGCGAAGTACTTTAGTACAAGGGCTAGATTGCGAACTCACAATAAAATGTTGCACCTCGTGATTTCTTGTAAGATTTGTGAGGAAAAGATATCTTATCCTAAATTACCATATCATATGCACGAGGCGCATGGTGCTCCGATACCGACATGCGGCATTTGCGGCTTCAAAACACATAGGGAAGTCGTATTAATCAGTCATCAAAGAAGAGTTCATATGAAAGAAAAAAATGTATCATGCCCTTCTTGTGATTTGAAGTTTTTTGATACATCGCACCTAAATAGACATTTGGTTAAACACAGGAATGCAAGGAATTATGAGTGCGAATTTTGTCATAAGAAATTTCAAAGGCGACGTAATATGCTGCTTCACGTCAAAATTCATACCGGTGAGAAGGATAAAATAtgtagtgtatgtgatgcagcttttgtgcagaaagccagtcttaattatcatatggttaaacatcatccggaggttgTGTAA
- Protein Sequence
- MKRASDLPKMAVRLHFFVHLAKETSAEKNITQGVSQAACLPRSPTTSQFLPGILARASSIIRYRSNRVLPALGDNSNNALRYATVDKISTADLTEHYKVILNERTGKNEYFCPKCEAFLSHKETMKQHIRNFHLKEQMRNNEKSLNKHLCDICSKYFSTKFNLQYHIKMVHLLTSCEICEEKISYPKLPYHMNEAHDTPIPTCGICGFKSSSERLINKHQRRVHMKERNVSCPSCDLKFFDTSHLNIHLEKHTLQKCFECQLCHKKFQWRSSLAAHVKIHTEKIPTADLTEHYKVIINDKTGENQYFCPKCRLFLRSKIIAEKHILNVHLKEQLKNNEKDKYYCDICSKYYSCKANLRNHIKRVHLLSSCKICGEKYSFIKLKYHMHEAHGAPIPTCGICGLKAYKESIVRSHQRKVHMKEKNVSCPSCDLMFFNGTDLNKHFVKHTNVRDFQCEFCHKKFRRQSTLALHWKIHTGRIPTADLTEHYKIIINEKTGKNQYFCPKCQLFLRSKNTIENHILSRHLKNSEKPLVKEYYCDICAKYFSTRARLRTHNKMLHLVISCKICEEKISYPKLPYHMHEAHGAPIPTCGICGFKTHREVVLISHQRRVHMKEKNVSCPSCDLKFFDTSHLNRHLVKHRNARNYECEFCHKKFQRRRNMLLHVKIHTGEKDKICSVCDAAFVQKASLNYHMVKHHPEVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -