Tpel002803.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411270.1:4430938-4433446[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00082 0.045 14.2 0.8 1 23 100 123 100 123 0.97 2 17 0.00014 0.0076 16.7 1.8 1 23 132 155 132 155 0.97 3 17 7.6e-05 0.0042 17.5 2.4 1 23 199 222 199 222 0.98 4 17 4.5e-06 0.00025 21.3 0.8 1 23 233 256 233 256 0.97 5 17 0.02 1.1 9.9 0.7 2 23 278 300 278 300 0.96 6 17 0.00099 0.055 13.9 1.7 1 23 309 332 309 332 0.97 7 17 0.0059 0.32 11.5 2.9 2 19 337 354 336 356 0.93 8 17 0.0046 0.26 11.8 1.1 2 23 361 383 361 383 0.91 9 17 0.0014 0.079 13.5 1.7 3 23 391 412 390 412 0.96 10 17 0.00021 0.012 16.0 1.3 1 23 417 440 417 440 0.97 11 17 0.0011 0.063 13.8 0.3 2 23 450 472 450 472 0.91 12 17 0.27 15 6.3 2.4 1 23 480 503 480 503 0.92 13 17 0.0019 0.1 13.1 3.1 2 23 553 574 552 574 0.97 14 17 0.94 52 4.6 0.5 2 23 581 604 580 604 0.94 15 17 0.013 0.73 10.4 3.1 1 23 609 631 609 631 0.96 16 17 0.0022 0.12 12.9 3.0 1 23 638 660 638 660 0.98 17 17 0.15 8.2 7.1 3.0 1 23 666 689 666 689 0.96
Sequence Information
- Coding Sequence
- ATGGCAGAAGATACTAGAAAAGATCCCACTTTACAACTGCCAGAAGAACCGATGTCATACAAAATAAAACGGAAGAAAAAAATAAAAAAAGATCCACTGTCTGATGATAGTTTTGCGCCCAGCAACGTTGAAATCACTTTTGAGCCTGAAAAAAAAATTAAAGTTGAAAAAATTGAAGTTAAAGTTGAAATAGAGCAGATGTTAGATAGTGAGATGAGGACAGATATTGATACGAAAGAGCGTAAACTGTCAACAGAATCAGTCGACGATCCTCCTCAAATACCACAATTCAAATCCTACATTTGTGACTTATGCAATTCGGTCTTCAGCAGCGAACAAACATTACGGGCTCACAAGAATCGTAAACACGATGTCCATGATGAGAGATTAGCGTTCAGATGTACCCGTTGTCCGAGAGCTTTCTCTTTGAAAGCTAGTTTGAAGATGCATTATAAAAGAATGCATTCAGTCAAACGTAAAGCTAAGGACATGGAATTGAGAGTCTGCGAGATATGTTCCGCTACCCTGCTCGGAATAGACAGGCTCAAACACCATAAAATACGACAACACGGCGTTCAATATGTAGATTGTAAACACAAGTGTCCGTATTGTAAAATGGCTTACGAAAATTACAAAAGTTTAGTTGTTCATATGAGACGTAAACATATCGAAAAGGAAGACCAACCTGCTCAAATATTCAGCTGCCCTTTCTGCCCCAAAACCTTTAATGTCAAAAGCTCCCTTATGGTTCATGTTAAAAGGAATCACAGACAGAGCGACGTCAAACGGTCTAATGATTTGTCAAAATATGTCAAAGAAAACGGGGAAGCGGTTTGTCCGTTCTGCAAGATTAGTTTTGTCAATGTCAGATACCTCAAATTCCATATGCAGAGAAACCATGATTCTTATAAGGATTCGTTTAAACATAAATGTAAAATTTGCGCTTTGAGCTATGATAATTTGGCAAGTTTAAAATCCCACGTCAGAAGGAAACACGACAACCGGTGTTACTGCAAAATATGCGATAAACGATTCGATAATTACGAATTATACACAAAGCACTTTGAAGAGGGGGAACCCGTTTGCAAGGAGTGCGGGTTAGTCTGCGATACTCACAAAAGTTTAACCGATCACATTGATGCGGAGCATGCAGATGAAAAGAAGGTGTTTTGTCATGAATGTGGCGCCAAATTTAAAAACTTGACTCGGCTCAAATTGCACATAATGCAAATTCATGAAAAGAAAGAATTTCCGTGCAATAAATGTAGTAAAGTAATGAAAACTAATGATGGCCTACGAAACCATATTAAAAAGAAACATTTTGGTGAATTATCTATAAAGGAACGCGAGTGTCCTTATTGTGAAGAGAAATTTAATAATGAAGTTTTGTTATGTAATCATATAGATGATGTACATATGGTGAAGGAAGATAGCTCGTTTTGTTGCATGCAGTGCATAGAAAAGTTTGATACTAAGGAGGAATTAAAAACACACTATGAACAGGAACATTTGGATAGGAAAAAGTACAAAAGAACTAAGAAAATTAAAACTGAAACTCTTAATATAGATGGAGACGAAAAAGTTAAATGCGACGTTTGTAGTATGTTAGTTTTATCGAAGAATATCGCTAAGCACATGACGACACATATCAGTTTAAAATGTACACATTGCGATTATGAAACAATGACTAGAGTCGATTTTACAAAGCATATGCTCAGGCACAAAGACGCGATACCGTTAAAATGCGAAGCTGAGAATTGTAACTATTCCACGTTCAACCCTTTAGTGTTTAAAAGACACGTCAAAAACCATACAGCGGCGAAATTTAATTGTTCCACGTGCGACTTTAAAACTACGAATAAGTATTTGTTGAAATACCACGAGAAGGAACATGTGAATGGCAAAAAGTATTACAAATGTCACGAGTGTGATTACAATACTCCTATACAAAATAATTTGAAACAGCATAAACTGAAACACTCATCGGAGAAAAAGTTTAAATGTAACATATGTACTTTTGCAACTAAATATACTTCGTCTCTAAGGTTTCATATTAAGAATAAGCATGGTGATTTGTAA
- Protein Sequence
- MAEDTRKDPTLQLPEEPMSYKIKRKKKIKKDPLSDDSFAPSNVEITFEPEKKIKVEKIEVKVEIEQMLDSEMRTDIDTKERKLSTESVDDPPQIPQFKSYICDLCNSVFSSEQTLRAHKNRKHDVHDERLAFRCTRCPRAFSLKASLKMHYKRMHSVKRKAKDMELRVCEICSATLLGIDRLKHHKIRQHGVQYVDCKHKCPYCKMAYENYKSLVVHMRRKHIEKEDQPAQIFSCPFCPKTFNVKSSLMVHVKRNHRQSDVKRSNDLSKYVKENGEAVCPFCKISFVNVRYLKFHMQRNHDSYKDSFKHKCKICALSYDNLASLKSHVRRKHDNRCYCKICDKRFDNYELYTKHFEEGEPVCKECGLVCDTHKSLTDHIDAEHADEKKVFCHECGAKFKNLTRLKLHIMQIHEKKEFPCNKCSKVMKTNDGLRNHIKKKHFGELSIKERECPYCEEKFNNEVLLCNHIDDVHMVKEDSSFCCMQCIEKFDTKEELKTHYEQEHLDRKKYKRTKKIKTETLNIDGDEKVKCDVCSMLVLSKNIAKHMTTHISLKCTHCDYETMTRVDFTKHMLRHKDAIPLKCEAENCNYSTFNPLVFKRHVKNHTAAKFNCSTCDFKTTNKYLLKYHEKEHVNGKKYYKCHECDYNTPIQNNLKQHKLKHSSEKKFKCNICTFATKYTSSLRFHIKNKHGDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -