Tpel010864.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411246.1:1410661-1421025[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.71 39 5.0 0.2 1 21 283 303 283 307 0.91 2 12 0.0023 0.13 12.8 1.1 2 23 451 473 450 473 0.97 3 12 0.00023 0.013 15.9 1.3 1 23 479 501 479 501 0.97 4 12 0.027 1.5 9.4 0.2 1 23 507 530 507 530 0.88 5 12 8.3e-06 0.00046 20.5 4.4 1 23 535 557 535 557 0.97 6 12 1.2e-05 0.00064 20.0 0.1 1 23 563 585 563 585 0.97 7 12 4.8e-05 0.0027 18.1 2.6 1 23 591 613 591 613 0.98 8 12 7.3e-08 4e-06 27.0 0.5 1 23 619 641 619 641 0.98 9 12 2.8e-06 0.00015 22.0 1.5 1 23 647 669 647 669 0.98 10 12 1.4e-05 0.00078 19.8 0.4 1 22 675 696 675 696 0.95 11 12 0.0036 0.2 12.2 1.2 5 23 706 724 704 724 0.96 12 12 0.0031 0.17 12.4 3.3 1 23 730 753 730 753 0.96
Sequence Information
- Coding Sequence
- ATGGGGTGCAATTCAATGCTTTATAATTCTGCAATTTGTCGATTATGCGGAGAAGAAAATGAGAATGGATGTTTTTTATATTGCTATGATGAGAATGAACAGAATTTGTGCGAATTGATAAATACATTTTTGCCCATTAAGCTGGAAAACGATGGGCGCATGCCGCGAACTATTTGTCCAGGATGCAATATACAGCTGGAGGCCACCATGGATTTCATAAAACTTATCATAAAAGGACAGCAAATATTAAAGAATATGTTATTGAAAGAGATCAAAATTCCTGATTTAAAATTATTTGAAGAAGTCGTCAAGTTACCGGATCCAATTGAAATAGGTACAGAATGCATATATCCTCCAAACCATCCAGCAGCACTCCAAATTCGTGAACAATACAAACCAAGAAGGAAACGTGGAAGACCAACAAAGAAAAACAAACCGAAGGAGGAAGTAGTCGACTTGGAGGATGCACTTCCACCTCCGGAAGAAGCAGTTGTCGCAGTAGAAGAAGAACTAAGTGGTAAAAGGCGCAGGAAAACGCCTGTAAGGTTCAAAGAAGCTGTTCAGGGCAAAGAATTAGAGCGCATTTTCATTCAAGAGGGTGTTATAGATGCTGGAGATAGTGATATAGATCTAAAAGTTAGGCCTGAATCCCCTGTTTCCAAAGTACCTGAGGTTATTGGACATTCTGAAGTTTCTGGAGAACTTGTTGTAGTTGTTAAGGGGAAAGGACGCGGAAGGCCAAAAGGTAGTTTGAAAAACAACAAAGATACATGCGTTATTTGTGGTCTGGAATTCTCATGTGTAGGTAGATACATGTCACATGTAGCGCAACATGGTAAAGTCAAATTTCAATGTGAGTCGTGCGAGGAAACTGTCGACACACGAATACAGTTTGATGATCATCAGAAAGACTCTGGTCATACAGGACTTGTTGTATTGCTCGGGGATGAAGAAGTGCCAAAAAAAGTTTATAAGAATGAAAAGAAAATAAACCAAAGAAAACTTCAAGAACAACAAGATATAGAAAAAAATCAAGCGAAAGTTGAAGAATTAGTCGATGACAAGATTCAGTATGTAAAAACTGATGAACCGCATATTGTTGAAGAAACTCATCCAGAGTCGGACGAGATAGATAATGATTTGGCAATTAATTCTATGCAAGATTCACCTATAGTTAACGTTATGGATGATCCTCTTTTAAACAATGTTGAAACGAGGAATGAGCAATCTAATGAAGATGGCATTGTTGTATTGTCGGATAATGAGGCTGGAGACTCTGGAGAAGCACCTCCGAGTAAAGATGAGTTACCTAGTGAAGAACCTACACCTCCTAATGCAAAAAAACGTGTTAAATGTAATTTATGCGAAAAAACTTTTGGCTCTAAGCAAAGCAAATCTGTACACATGAAGGTCAGTCATTCAGGTGAACGTCCGCACAAGTGTACTGAATGTGGTTTGTCATTCCCTTATGCGAGATCATTATCATTGCATTACATTAAACATCGACGCACTAGGGGTTTCGCCTGCGATCTATGCGGAAAGGTACTAAATCATCCATCTTCAGTGGTGTATCATAAAGAAGCGGAGCACGGCGGTCAAAGTTACGCTTGTGGTAAATGTGGAAAATCATTTAAGCATAAACAGTTATTGCATCGACATCAACTTGTGCATTCGCAAGCGCGGCCCTTTCAATGCGGCGTTTGTGATGCCGCATTTAAAACGAACGCCAATCTTATCAATCACCAAAGTCTTCACACTGGATTTAAGAAGTTTTCATGCGATATTTGTAAACAAAGATTTGCACATAAAACAAGTCTCACGTTACATCTGCGTTGGCATACAGGATATAAACCATACGCATGCGCGGTATGTAACAAAACGTTTTCACAAAAGGGTAATCTTTCCGAACATATGCGCACACACACAGGCGAACGTCCGTTCCAATGCGCTGACTGCTCAAAGTCTTTCGCTACATCGTCTCAGTACAAATTACATTTAAGACAACATACGGGTGAACGTCCATTTGCGTGTCCACAGTGCGGGAAGAGGTTTATGTCCCGTGACTCATGGCGTAATCATATGCGTCGTGAGGCAGGTTCACGTGCATATCGTTGTGAATGCGGACGTGCGTTTGCTGACAAATGCGCACTTGTCAAGCACAGGAGACAACACACCGGAGAGAGACCTTTCAAATGTCCATATTGTTTAAGACACTTCTCTGATGGATCTAATCGAAATAAACATGTAAAGCAAATGCACAAAGACTTATTACAAAGGAAGAGTCTTCTAGCTCCGATTGACGGAAAACCGTTACCACCAATTGAGGAGATTGATAAAGTAACAAATATGCAAAAAGTGACCGACGCTGAGTTGGAAGAGCGTGTTATAATTGTCACGTACGATATACATAATGATGACGCGTCTACATTGCATATACTGGACCCAGAGAATGAAACAGTTGAGGATAATAAAGTGTTTAGATCATTATATGAAGAGTCTACAATGTTATCTGAAGGTATCAAAACTCCTCCGATAACAACACCAGAGAAACCGGCTCTGTACTATGAGGATGATAACATCCCTGATTATCCTGAAGAACAAGAGCAAATGACTATAACAGATGAACAAGGCAATCCAATCCATTTCACAATGCAGGATGGGACACGACTCGCTATTACTTCCGCGGACGGTGGACGCTCTCTACAGGTGGTGACACGTGATGGACAAACTATTCCAGTTGAAATTAATAATTTCATGAATGAAGAGGAGGTCCAAAGTTCAGAGGCAATACACGAGTTAAATCTACAAAAAGTGCTCGAAGAAGAATCGCCTGCTTCGCAATTTTTCTCCATAATGCAATGA
- Protein Sequence
- MGCNSMLYNSAICRLCGEENENGCFLYCYDENEQNLCELINTFLPIKLENDGRMPRTICPGCNIQLEATMDFIKLIIKGQQILKNMLLKEIKIPDLKLFEEVVKLPDPIEIGTECIYPPNHPAALQIREQYKPRRKRGRPTKKNKPKEEVVDLEDALPPPEEAVVAVEEELSGKRRRKTPVRFKEAVQGKELERIFIQEGVIDAGDSDIDLKVRPESPVSKVPEVIGHSEVSGELVVVVKGKGRGRPKGSLKNNKDTCVICGLEFSCVGRYMSHVAQHGKVKFQCESCEETVDTRIQFDDHQKDSGHTGLVVLLGDEEVPKKVYKNEKKINQRKLQEQQDIEKNQAKVEELVDDKIQYVKTDEPHIVEETHPESDEIDNDLAINSMQDSPIVNVMDDPLLNNVETRNEQSNEDGIVVLSDNEAGDSGEAPPSKDELPSEEPTPPNAKKRVKCNLCEKTFGSKQSKSVHMKVSHSGERPHKCTECGLSFPYARSLSLHYIKHRRTRGFACDLCGKVLNHPSSVVYHKEAEHGGQSYACGKCGKSFKHKQLLHRHQLVHSQARPFQCGVCDAAFKTNANLINHQSLHTGFKKFSCDICKQRFAHKTSLTLHLRWHTGYKPYACAVCNKTFSQKGNLSEHMRTHTGERPFQCADCSKSFATSSQYKLHLRQHTGERPFACPQCGKRFMSRDSWRNHMRREAGSRAYRCECGRAFADKCALVKHRRQHTGERPFKCPYCLRHFSDGSNRNKHVKQMHKDLLQRKSLLAPIDGKPLPPIEEIDKVTNMQKVTDAELEERVIIVTYDIHNDDASTLHILDPENETVEDNKVFRSLYEESTMLSEGIKTPPITTPEKPALYYEDDNIPDYPEEQEQMTITDEQGNPIHFTMQDGTRLAITSADGGRSLQVVTRDGQTIPVEINNFMNEEEVQSSEAIHELNLQKVLEEESPASQFFSIMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -