Tpel008075.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea pellionella
Gene Symbol
-
Assembly
GCA_948150575.1
Location
OX411261.1:7922341-7939224[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.026 1.5 9.5 0.7 1 23 489 511 489 511 0.97
2 11 2.7e-05 0.0015 18.9 1.6 1 23 527 549 527 549 0.98
3 11 1.3e-05 0.00073 19.8 6.4 1 23 555 577 555 577 0.98
4 11 1.4e-06 7.9e-05 22.9 1.1 1 23 584 606 584 606 0.98
5 11 3e-05 0.0017 18.7 1.3 1 23 612 634 612 634 0.96
6 11 7.7e-05 0.0043 17.4 0.4 1 23 640 662 640 662 0.96
7 11 4.3e-07 2.4e-05 24.5 1.6 1 23 668 691 668 691 0.96
8 11 4.5e-05 0.0025 18.2 1.1 1 23 697 720 697 720 0.96
9 11 9.4e-06 0.00052 20.3 3.5 1 23 726 748 726 748 0.98
10 11 3e-05 0.0017 18.7 3.4 1 23 754 776 754 776 0.98
11 11 0.00017 0.0096 16.3 0.3 1 23 782 806 782 806 0.93

Sequence Information

Coding Sequence
ATGACTACATTTAAATCTTGTCTTATATGCAATACATATAAAAATGATTGTATGTCTGTGTTTGATAGTAAAGTCATACTTAAATCAGGTAATAAGTTGACAGCGGTTATTAATAAAATATTAGATGAACAAGTAACAAGGCAGCGAGACGATGCGTCGGAAATATGCAAATCATGTTATAAACATTGTTTAGAGTATGATCAATTACACTCAAGGCTAAAAGAAATAAAAGCAGATTTGAAACATCAACATAAATCGACAGTTTTGAAAGTTGATTGTCAAAACTTAGCTGCAGACTCTCCCAAATCAGCGCCAAAGAAACTTGTGTTGCCAGCTTCCAAATTAAAACCATTGCCAGATAATTATATTATTAACGTAAAATCAGCATTGATTAATAATAAATCAACATCAGCTACAAATATTAAAACAAATCAAAAAGATGACATCAAACCAGGAACATCATTATTATCAACAAACGTCAAATCTCCAATAAAACCATCAAATGTTATTTCACCAAAGTTGAAGACCACACCTTCGTACTCACCAAAACGTTTGCCCAGACTAGCACCCAAAGTACAATCAACTGTGCCAAACAAACCAACTACCAGTTCCATATTAACGAGTGCCAGTAGTCTGTTAACAACACCCAGTAGTCTATTAACAACTCCCAATTCTATATTAACAAGTGATGGCAATCTATTAATAACTTCCAATTCCATATTAACTAGTGCTGGCAGTCTATTATCAACTCCCAGTTCCATATTAACAAATGGCGGTTCTTTATTAACTAGTACTGTTGAAAGAGATCCGTTATCTCAAGAGGTTATAAGAATCACAGATAATTTGGATAGCAGAAATGTGAATGTAATTTTACATGAAATTAATGAAGAACACCCAATGGAGATCGATGAAGAATGTACGTATGTGAATTTGAAAACTGAAGATATATCTGAAGCAACTGAGCAGCAGGATGAAGATGATGATGAAGATGATGGCAGTGATCAGGAGTTGATTAAGATTACTTTGCCATCTATAGACGGTGACAGTAACAATGATGATCAAATACAGGAATCCGAAGACTTTGTCATAGGAAAAGTTGAAATTATGGAGGGTGACCATGAATTGGGTGATGATCATGCGATTCTGATGGAGGAGAATGGATCAATAATCAGGTTGGTGTCGGGGCAGAAGTTTATTTATAATGATAAAGAGATATCATTAATAATACCTGAACAGGATAGTGATAATAATCAGGAGGAAGCCTACACTTACATAAAAACTGAAACGGAGGAAGTGCGTGGCGTGGAAAGTATTTCAACTCAAAATGAAGCCCATAATATCGTACAACCAGATGGTGAATATTTCAAATGTGTTTTATGCGAGAGATCCAAAAATAGAGTGTCATTCTCATCCGACGCGTTGTCTGTGATGCGGCATGTGCGCGATGAACACAATGCGCGCGTGTATATATGCAGCACGTGCGGGGAAATTATGAGGAAACGGTCAGATTTCACAGATCATACGACGATGCACGCCGACGAGTCATCAGCAAGTCGCGGACTGGAGCGTAACGCGTACTATGAGTGCCATTATTGTTCTAAAAAATTCGTCTCGAGAAATTTGTTAATCGACCACGTGAACGTGCACAACGGCACCAAACCGCATCAGTGCGATAAGTGCAATAAGAAATTTTCATCACGATATACTTTTCAAGCGCATCAGAAGACACATATGGATAGACCGAGGCCGTACTCCTGTCAAACATGTGGGAAGGCATTCTATACGTCGCAGAATCTCACACAGCATGTTAAGATACATCAGCATCGGGAGGAGTTCGAGTGTAACGTTTGCCACAAAATGTTTGGTTCCCAACATAATTTGGAAGTGCATGGCATTGTGCATTCCGGCAAGAAGCCATTTTTATGTGGAATATGCAATAAACAATTCGCAAGACGCGCCGAAATTAGAGACCATCTACGAACGCACACCGgtgagcgtcccttcaaatgtgacctttgcggtacttcgttctctcagcgctcgaatcttcagtcgcacaaacgcgcaacacattacaatgaccaaagatatgtgtgtacagaatgtcccaagaagtttaaacgacgcAGATTATTGgattatcacataaaggcgacacacacgggcgagaggccacacaagtgcagtatatgcggcgccacgttcgtgtatccggagcattataagaaacacctgcgcagtcacagtggacagaagccgtactcgtgtgCTGTAtgtcataaaacattttcaacgcgtgacaatcgcaatgtccacatgttcacgcatagcgatagaaaaccatacgagtgtgtcgtgtgcggcGCTAACTTTATGAGGAAACCGCAATTATTCTCACATATGAGGTCTTTTGGTCACTTGTCTGAACAAATAATGATTAATCAACCAAGATTGACTCCCGACAACAATGAGGTAATCACGGATCATAGACTGTTGGCGGTAGAGGGTGATGATACGGAACAAGCGGATGAGATGACAGAGGACTCCGACACTGCCAAAGTGTTGATTACTAATAAAGGAATCATTTTGCGCGATGATGCCAATGTGAAATCTGATGCAAATGATACAACAGATCTATCAGGGAACCCTGAGATCGTGGCCAAAGATAGTTCTGGTGGCGTTGTCTTCAGATTAGTACAGATGGAGTTGGAAGGCGGAGGGACTGGGTGGGTTACTGTAGAGGAATAG
Protein Sequence
MTTFKSCLICNTYKNDCMSVFDSKVILKSGNKLTAVINKILDEQVTRQRDDASEICKSCYKHCLEYDQLHSRLKEIKADLKHQHKSTVLKVDCQNLAADSPKSAPKKLVLPASKLKPLPDNYIINVKSALINNKSTSATNIKTNQKDDIKPGTSLLSTNVKSPIKPSNVISPKLKTTPSYSPKRLPRLAPKVQSTVPNKPTTSSILTSASSLLTTPSSLLTTPNSILTSDGNLLITSNSILTSAGSLLSTPSSILTNGGSLLTSTVERDPLSQEVIRITDNLDSRNVNVILHEINEEHPMEIDEECTYVNLKTEDISEATEQQDEDDDEDDGSDQELIKITLPSIDGDSNNDDQIQESEDFVIGKVEIMEGDHELGDDHAILMEENGSIIRLVSGQKFIYNDKEISLIIPEQDSDNNQEEAYTYIKTETEEVRGVESISTQNEAHNIVQPDGEYFKCVLCERSKNRVSFSSDALSVMRHVRDEHNARVYICSTCGEIMRKRSDFTDHTTMHADESSASRGLERNAYYECHYCSKKFVSRNLLIDHVNVHNGTKPHQCDKCNKKFSSRYTFQAHQKTHMDRPRPYSCQTCGKAFYTSQNLTQHVKIHQHREEFECNVCHKMFGSQHNLEVHGIVHSGKKPFLCGICNKQFARRAEIRDHLRTHTGERPFKCDLCGTSFSQRSNLQSHKRATHYNDQRYVCTECPKKFKRRRLLDYHIKATHTGERPHKCSICGATFVYPEHYKKHLRSHSGQKPYSCAVCHKTFSTRDNRNVHMFTHSDRKPYECVVCGANFMRKPQLFSHMRSFGHLSEQIMINQPRLTPDNNEVITDHRLLAVEGDDTEQADEMTEDSDTAKVLITNKGIILRDDANVKSDANDTTDLSGNPEIVAKDSSGGVVFRLVQMELEGGGTGWVTVEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-