Tpel009063.2
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411255.1:6085100-6103519[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.8e-05 0.0032 17.8 2.7 1 23 445 467 445 467 0.97 2 20 0.016 0.87 10.2 1.1 1 20 473 492 473 495 0.93 3 20 4.9e-06 0.00027 21.2 4.5 1 23 509 531 509 531 0.98 4 20 3.6e-05 0.002 18.5 4.6 1 23 537 559 537 559 0.99 5 20 3.6e-05 0.002 18.5 5.3 1 23 565 587 565 587 0.97 6 20 8.7e-06 0.00048 20.4 6.7 1 23 593 615 593 615 0.98 7 20 6.9e-07 3.8e-05 23.9 2.0 1 23 621 643 621 643 0.98 8 20 9.8e-05 0.0054 17.1 6.7 1 23 649 671 649 671 0.97 9 20 6.3e-05 0.0035 17.7 5.3 1 23 677 699 677 699 0.97 10 20 4.7e-07 2.6e-05 24.4 1.9 1 23 705 727 705 727 0.98 11 20 8.9e-06 0.00049 20.4 7.9 1 23 733 755 733 755 0.98 12 20 4e-05 0.0022 18.4 6.8 1 23 761 783 761 783 0.98 13 20 3.7e-06 0.0002 21.6 5.8 1 23 789 811 789 811 0.98 14 20 3.1e-06 0.00017 21.9 5.2 1 23 817 839 817 839 0.98 15 20 2.3e-06 0.00013 22.2 4.3 1 23 845 867 845 867 0.98 16 20 3e-06 0.00017 21.9 7.1 1 23 873 895 873 895 0.98 17 20 1.6e-05 0.0009 19.6 8.0 1 23 901 923 901 923 0.97 18 20 1.1e-05 0.00059 20.1 0.6 1 21 929 949 929 950 0.95 19 20 0.00045 0.025 15.0 0.3 1 23 959 981 959 981 0.96 20 20 0.74 41 4.9 5.3 1 23 990 1012 990 1012 0.98
Sequence Information
- Coding Sequence
- ATGAATCAGGAGCATCATAGTTTAAATGCGGGCGGTGGCCAGCCACCTGGGAATTCTGAGTCTCAAACACAAAGATCGGTTGTACAGCAACAAGGGAATGCGTTGACTCCCGTGTCTACGTCAGCTACCGATTTGCGAGTCAACTCGGCAGCTGTGAACGTTGCATTGTCTAGCGTTGCGAAGTATTGGGTGTTTACAAATTTGTTCCCGGGGCCGATCCCTCAAGTTTCGGTCTATGGATTACAGGCGGGGCCACGAATTGAAAATGGGAAACCAGTTCAAGATCCTCTTCAGACGCATACAAGTATACTTAATGGTGATCCTAATAACTTAGTTCTTGGTCATCACACACAATCACCAGTAGTGAGTGCTGGAGGACAACAGATACCCGTGGCACAGATTATAGCTGCACAATCCGGGCAGACACATGAGACACTGACTCACGCGGGACAGCTGACAGCGCAGACGGCGGAGCTGACAGGTCACGGGTCTGGCGGTTCCGGTAACTCTGCCTCTCACCATCAGGTACCCAATACTCGGGTCGAATTTGTACATCACCATAATCTTGATCTGGTAAATTATGGGGGGCATCATCATGCACATCAAAGTATATTGCAACAACAGCTGTTGTCCACGGCTAGACCAGATGCAGCACAACAGATTCAGCTAACCGTGAGCGAGGATGGCATTGTAACTGTGGTGGAGCCTGGCAACAAAATTGTGGAAAAGGATGAAATTCACGATATCAAAATGCCACAAGATCACACCTTTACAGTGCACCAGTTGCAACAGATTGTTAATCAACAGGTAATAGACAGCGTGGTGCGTATCGAACAAGCGACAGGAGAGCCTGCGAATATACTTGTGACGCACAATCCCGATGGTACGACGTCAATCGAGGCAAGCGCACAAGATCCCCTTCTTATTAAGGACGAAAAGAACAAGGTCGAAACTGCTCAGTTTGCAATTCCTGCTGATATTAAAGATATCAAAGATTTAAAAGGCACTATTGATTTAAAGAATGTCGGTGGCTTGGGTATGGAAGTTGTAAAGATATCGCAGGCGGGAACACAAGATCACGAGTTGCATCCCATGTATAAAGTCAATGTTGAAGATTTATCTCAACTACTCGCATATCATGAAATTTTTGGTAAACTCGGCGCTGAGGGTGCAACAACGCAACAACAGCCTCAAACTCAACAATTAAAGCAACAACAACCGCAGCAGCAACAGCAACAACAACAGCAACAGCAGGCGCCGCAACAAATGGAGATTGAAATTGAACCAGGTCCGAGCGGAGGACTCACCGAGGCTGATACTACTCCCGGACACCATTCGTGCGATATATGTGGAAAAATGTTTCAGTTCCGATATCAACTTATTGTACATAGACGCTACCATGGCGAAAGAAAACCATTTACCTGTCAAGAATGCGGGCAAGCTTTTTTGAATCCTATGGAACTAACAAGACATGGAAAGTGCCATCTAAATGATAGAACAAAAAGAATAACGCAAGACAAGCCGTATGCGTGTACTACGTGCCACAAGACGTTCGCGCGCAAAGAACATTTAGAAAATCACGTCAGGAGTCATACTGGTGAAACTCCGTACAGGTGTCAGTATTGTGCGAAGACATTCACTCGTAAGGAGCATATGGTGAACCATGTGAGGAAGCATACGGGTGAGACGCCGCACCGTTGTGATATTTGCAAAAAGAGTTTCACAAGAAAAGAACACTTCATGAATCATGTTATGTGGCATACAGGTGAAACTCCTCATCAGTGTCACCTATGCGGAAAGAAGTATACTAGAAAGGAACATTTAGCGAACCATATGCTTTCTCATACGAATGACACGCCATACCGATGCGACCTATGCGGAAAAGCATTCACGAGGAAGGAACACTTCACAAACCATATATTGTGGCATACGGGTGAAACTCCGCATCGTTGCGATTTTTGTTCGAAAACGTTCACTCGTAAGGAGCATCTGCTGAATCATGTCCGTCAGCATACGGGTGAATCGCCGCACAGATGTAGCTATTGTGCGAAGTCTTTCACAAGGAGGGAGCATCTTGTCAACCATGTGAGACAACATACGGGCGAAACTCCATTCCAATGCGGTTATTGTCCGAAAGCATTTACTAGGAAGGACCATTTAGTGAATCACGTGCGACAGCACACGGGCGAATCACCACACAAATGTACATATTGTACGAAGTCTTTCACTCGCAAAGAGCACCTGACGAATCACGTGCGTCAACACACCGGGGAATCACCTCATAGATGCACGTTCTGCGCGAAGTCGTTCACCAGGAAAGAACATCTCACAAATCATATACGTCAACACACGGGCGAAACTCCACACAAGTGCACGTTCTGCCCCAAGGCGTTTACGAGGAAGGAGCATCTCACAAATCACATAAGACAACATACCGGTGATACTCCGCACACGTGCTCCTATTGTAACAAGGCGTTCTCTAGGAAGGAGCATCTCGTCACTCATATAAGACAACATACTGGGGAGACTCCATACGAGTGCAGTTACTGTTCGAAGGCATTTTCGAGGAAAGAACACCTCAACAATCACATACATGTACATACGGGCAATAATCCACATAAGTGTACATATTGTACGAAGACATTCTCCAGGAAGGAGCACCTCACCAATCATGTCAGAATACATACGGGAGAATCGCCGCATCGTTGTGAATTTTGTCAAAAAACATTCACAAGAAAGGAGCACCTGACGAATCATATGAAGCAGCACAATGGCGATACGTCTTTTGTATGCAAAATGTGTTCAAAGACATTTATTAGGAAGGAACATCTTACGGCGCATGTTAAGGCTTATGCGTGTTCTACAGAGCGTCCTTTCACCTGTGGCGAATGCGGCAAATCATTCCCGCTAAAAGGTAACTTGCTTTTCCACGAGAGGTCGCATAATAAAGCGGGCGCTAATAGACCGTTCCGATGTGAAGTATGCTCTAAGGACTTCCTTTGTAAAGGACATCTTGTAACACATCGACGGACGCACGCCGAAGTGACAGACGCGGCAACAGCTGAAAGTGAACCCGTTAATACTGATGTGGAGATGGAATGCACGCCTGAATGTGCCAAACCAGACGTCAAACTACTTGATGTCAAAATTGAAAATAGGGCTGTGAATGATGCAAATATTGTGCAAAACACCCAACAGCCTCAACAAAGCAATGCTGTGATGCAAATAGCCACCGGTCAGGTTAGTCAGCAGGCCGTGGTTCGAACGCCGTCCGCGCCGTACAGTCACCACCAGGCCAGCCCCACTATGCCGCCCCACCCCGTCACCGTCAACTACTGA
- Protein Sequence
- MNQEHHSLNAGGGQPPGNSESQTQRSVVQQQGNALTPVSTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLQAGPRIENGKPVQDPLQTHTSILNGDPNNLVLGHHTQSPVVSAGGQQIPVAQIIAAQSGQTHETLTHAGQLTAQTAELTGHGSGGSGNSASHHQVPNTRVEFVHHHNLDLVNYGGHHHAHQSILQQQLLSTARPDAAQQIQLTVSEDGIVTVVEPGNKIVEKDEIHDIKMPQDHTFTVHQLQQIVNQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAQDPLLIKDEKNKVETAQFAIPADIKDIKDLKGTIDLKNVGGLGMEVVKISQAGTQDHELHPMYKVNVEDLSQLLAYHEIFGKLGAEGATTQQQPQTQQLKQQQPQQQQQQQQQQQAPQQMEIEIEPGPSGGLTEADTTPGHHSCDICGKMFQFRYQLIVHRRYHGERKPFTCQECGQAFLNPMELTRHGKCHLNDRTKRITQDKPYACTTCHKTFARKEHLENHVRSHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCHLCGKKYTRKEHLANHMLSHTNDTPYRCDLCGKAFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHIRQHTGETPHKCTFCPKAFTRKEHLTNHIRQHTGDTPHTCSYCNKAFSRKEHLVTHIRQHTGETPYECSYCSKAFSRKEHLNNHIHVHTGNNPHKCTYCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHNGDTSFVCKMCSKTFIRKEHLTAHVKAYACSTERPFTCGECGKSFPLKGNLLFHERSHNKAGANRPFRCEVCSKDFLCKGHLVTHRRTHAEVTDAATAESEPVNTDVEMECTPECAKPDVKLLDVKIENRAVNDANIVQNTQQPQQSNAVMQIATGQVSQQAVVRTPSAPYSHHQASPTMPPHPVTVNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -