Tshe035645.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema shepardi
Gene Symbol
nfxl1
Assembly
GCA_902151425.1
Location
CABFVX010003909.1:30769-48570[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.1 5.6e+04 -3.3 1.1 15 19 167 171 166 171 0.81
2 17 0.15 7.6e+03 -0.5 0.8 4 10 202 208 201 208 0.95
3 17 1.6e-07 0.0083 18.5 16.4 1 19 216 233 216 233 0.99
4 17 1.7e-09 8.4e-05 24.9 15.8 1 19 269 287 269 287 0.99
5 17 1.2e-07 0.0063 18.9 18.0 1 19 322 340 322 340 0.99
6 17 3.4e-05 1.7 11.1 10.0 1 18 375 392 375 393 0.97
7 17 0.27 1.4e+04 -1.3 0.5 1 10 402 411 402 411 0.73
8 17 0.038 2e+03 1.4 15.0 3 18 429 444 427 445 0.92
9 17 8.6e-10 4.4e-05 25.8 11.1 1 19 454 472 454 472 0.99
10 17 7.9e-05 4 10.0 5.7 9 19 520 530 518 530 0.90
11 17 0.026 1.3e+03 1.9 4.9 4 12 542 550 533 550 0.87
12 17 1.4 7.2e+04 -3.6 2.8 14 18 579 583 579 584 0.88
13 17 0.065 3.3e+03 0.7 0.9 5 12 597 604 594 606 0.89
14 17 1.3 6.7e+04 -3.5 0.9 6 10 610 614 607 614 0.55
15 17 0.0001 5.2 9.6 5.0 1 12 620 631 620 631 0.96
16 17 0.00057 29 7.2 16.8 1 19 660 677 660 677 0.94
17 17 1.1e-05 0.54 12.7 11.7 1 16 722 736 722 742 0.90

Sequence Information

Coding Sequence
ATGGATGGTTCAAGAGGTAGAGGGCGAGGAAGCAATCCTTGGAATCGTGGAGGGAAACAAAACATCACTTCAAAGAAAGACGTGCCTAAGGCCAATGTGACAGCGAAACTTAGATTTGAAGAGGCACAAGCACGTTTGCAGGCGTCTGTTCAGAAACATATAAAACCAGATTATGAATCTTCATCTGAAGAGGATGAACTGGAAAGTGATAATATCCTTGGGTCTGTTTTAAAGTCGTACTCTCAGCTCGGTGGCAAGAGCGAAGATTTGGGTCGAACTCAAAGATTCTTGGAAGATGCCTTCCAATCAGGAGCTGCCACCTGCCTTATTTGTATTGCCTCGGTGAAGAGAAATGATGCGATTTGGAGCTGTGTAGAGTGCTACAGTTTTTTTCACTTGACCTGCATCCAACGTTGGTCGAAAGACAGCATCGCTCACCAGAAGCAAGCTTTGGAAGATGTCCCCCATAACACTCCTACCGTCAATCTTTGTTGGGCATGTCCCAAATGTCGCCATGAGTATGATCAGCAGAGCACGCCAAAGCGCTATACATGCTTCTGCGGTCAAACCGAGGATCCTCCGTACCATCCTTGGCTGGTTCCACACTCGTGTGGAGAGACTTGTGGCCGTCCCTTAAAACCGTTGTGCGGTCATGACTGTCTTTTACTTTGTCATCCAGGTCCTTGTCCGCCGTGCCCGAAGACAGTAAAGTGTGTCTGCTACTGCGGCAAACAGCCGGCACGTCTGCAGCGCTGCAGCCGTAAGACTTGGTCGTGTGGTACAGCGTGCGGGCGCATGCTACAGTGCGGGCGGCATCCCTGCGAGGAAGTGTGTCATCCTGGAGACTGCCCTGCCTGTCCCAAGACCAGCAAGCAGCTGTGTCAGTGCGGGGCTCAAAATATGGTCCGCCCTTGTGCGACACCTTTCTGGAACTGCACCAAGATGTGCGGCAAACTGCTTAGCTGTGGCCACCACCAGTGTGAGCGTGTTTGTCACCAAGGGAAGTGTGGGGTTTGCCCCCTGTCAGAGTCGCGCACTTGTCCATGTGGCAAAGCCGCCTTCATTCTTCCATGCACCCAGGACGCCCCCACCTGTGGTGATACATGCTCAAGACAGCTCAACTGTGGAGCGCACATATGCTCCAGGCCGTGTCACCGTGACAAATGTGGAGCGTGTTTGGAGGTTGTCACTAAATCTTGTCGCTGTGGACTTCACAAGAAAGAACTTCCTTGCCAGAAAGAATATTTATGTGAAACCAAGTGCAAGAGGTTGAAAGATTGCATTCGTCATCCTTGCAACCGCAAGtgttGCGACGAGACCTGCCCTCCGTGCGAGAAGATCTGCGGCCGTACCTTGCCTTGTGGGAATCACAAATGTGTGTCGGTGTGTCATCGCGGTCTTTGTTACCCGTGTCCCCTCAACGAGCAAGTCAAGTGTCGCTGTGGCAACACCGCCATAACGGTGCCTTGTGGTCGCAAGAGGAAGACCAAGCCTCCTCGTTGTAACAGGCAGTGCAAAATAGAAGCTGATTGCCATCACCCCAAGAGGGAGAACCACAAATGCCACTTTGGAGACTGCCCCCCGTGTCGTCAGGTATGCGGCAAGGTACGAGCGGACTGCCCCCATCCTTGTCCCGCCCTCTGCCACTCGGCAGTGTGGGTCCGTGTGGACGGGGATCACAAACCGGCTGGTCCGTGGGAGAAGGTGACCCCTCAACTCCAGATGGTGGACCTGCCTTGTCCCAATTGTATGGTCCCAATTCCTGTGACATGTGTGGGAGGACACGAGACATGTGATTGGCCGTGCCATCGGGCCAAACCCTCGTCATGCCATCGCCCGTGTGGTCGTGCACTATCTTGTGGGAACCACCTATGTTCACTACCCTGTCACACTGTTACTGGAGCCAAAGACATGGTCACCTCTGGTAGCGAGTGTGAGCAGTGCGAGTCTGGCTGCACCAAGGCTCGTCCCAAGGGCTGCTCTCACCCCTGCACCAGGCCTTGTCACCCAGACTCGTGTCCCCCTTGCAGTCAGATGGTGCGATTGCCTTGCCACTGTGCTCTCAATCAGAAATATGTCCGGTGTGGCGAGTGGGTGTTGAGCGATCAGGCTCAGCGAGTTGACATGCAGAGCTGTGGTAACCAGTGTCCCAGGAATTACCCGTGTAGTCACCGTTGTAGAGCTACATGTCATCCTGGGGACTGCCCCAATCCAGAGCTTTGTCACAAGAAGGTCAGAATACACTGCCCGTGCCGTCGACTGCGGAAAGAGTTCCCGTGTGATGCTGTGCGAGCTGGACAGGCCACCTTGGACTGCGACATCGTCTGCAAACAGAAGAAGGAAGAGGAGACTAAGgCAAAAGAACTGGAGCAGCTGAAGCAACAAATGGAAGTAGAACGCAAGAACCAGGAAGAGGTTGAACGTTTCCAAAGAAAATTTCAACAGCGCAAAAAACATAAAGAGCGTCATCAACAAAGTGATGAGGACAGTCGCTCTTTAATTAGTCGTTATTGGATGTTAGCTGTCGGAACATTGGGAGTATTGGTTGTGGGCTACTTTCTTGTACAaatatag
Protein Sequence
MDGSRGRGRGSNPWNRGGKQNITSKKDVPKANVTAKLRFEEAQARLQASVQKHIKPDYESSSEEDELESDNILGSVLKSYSQLGGKSEDLGRTQRFLEDAFQSGAATCLICIASVKRNDAIWSCVECYSFFHLTCIQRWSKDSIAHQKQALEDVPHNTPTVNLCWACPKCRHEYDQQSTPKRYTCFCGQTEDPPYHPWLVPHSCGETCGRPLKPLCGHDCLLLCHPGPCPPCPKTVKCVCYCGKQPARLQRCSRKTWSCGTACGRMLQCGRHPCEEVCHPGDCPACPKTSKQLCQCGAQNMVRPCATPFWNCTKMCGKLLSCGHHQCERVCHQGKCGVCPLSESRTCPCGKAAFILPCTQDAPTCGDTCSRQLNCGAHICSRPCHRDKCGACLEVVTKSCRCGLHKKELPCQKEYLCETKCKRLKDCIRHPCNRKCCDETCPPCEKICGRTLPCGNHKCVSVCHRGLCYPCPLNEQVKCRCGNTAITVPCGRKRKTKPPRCNRQCKIEADCHHPKRENHKCHFGDCPPCRQVCGKVRADCPHPCPALCHSAVWVRVDGDHKPAGPWEKVTPQLQMVDLPCPNCMVPIPVTCVGGHETCDWPCHRAKPSSCHRPCGRALSCGNHLCSLPCHTVTGAKDMVTSGSECEQCESGCTKARPKGCSHPCTRPCHPDSCPPCSQMVRLPCHCALNQKYVRCGEWVLSDQAQRVDMQSCGNQCPRNYPCSHRCRATCHPGDCPNPELCHKKVRIHCPCRRLRKEFPCDAVRAGQATLDCDIVCKQKKEEETKAKELEQLKQQMEVERKNQEEVERFQRKFQQRKKHKERHQQSDEDSRSLISRYWMLAVGTLGVLVVGYFLVQI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01450145;
90% Identity
iTF_01449157;
80% Identity
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