Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010001420.1:145195-152998[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.6e-05 0.026 17.3 0.1 1 21 443 463 443 464 0.95

2 15 0.025 6.9 9.7 6.2 1 19 467 485 467 490 0.92

3 15 0.0018 0.48 13.4 3.0 1 23 498 521 498 521 0.97

4 15 0.012 3.2 10.8 0.9 2 23 528 549 527 549 0.94

5 15 0.15 41 7.3 4.1 1 23 556 578 556 578 0.98

6 15 8 2.2e+03 1.9 0.8 2 10 585 593 584 595 0.91

7 15 0.003 0.82 12.6 1.7 1 23 642 665 642 665 0.94

8 15 0.037 10 9.2 2.8 1 23 672 694 672 694 0.98

9 15 0.002 0.54 13.2 2.5 1 23 700 722 700 722 0.95

10 15 0.027 7.3 9.6 1.2 1 23 728 750 728 750 0.98

11 15 1.3 3.6e+02 4.3 0.1 1 23 807 829 807 829 0.94

12 15 0.04 11 9.1 7.0 1 23 835 857 835 858 0.96

13 15 0.06 16 8.5 0.7 1 23 863 885 863 885 0.99

14 15 0.00088 0.24 14.3 3.0 1 23 891 913 891 913 0.97

15 15 3.8 1e+03 2.9 4.3 1 23 919 942 919 942 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.6e-05	0.026	17.3	0.1	1	21	443	463	443	464	0.95
2	15	0.025	6.9	9.7	6.2	1	19	467	485	467	490	0.92
3	15	0.0018	0.48	13.4	3.0	1	23	498	521	498	521	0.97
4	15	0.012	3.2	10.8	0.9	2	23	528	549	527	549	0.94
5	15	0.15	41	7.3	4.1	1	23	556	578	556	578	0.98
6	15	8	2.2e+03	1.9	0.8	2	10	585	593	584	595	0.91
7	15	0.003	0.82	12.6	1.7	1	23	642	665	642	665	0.94
8	15	0.037	10	9.2	2.8	1	23	672	694	672	694	0.98
9	15	0.002	0.54	13.2	2.5	1	23	700	722	700	722	0.95
10	15	0.027	7.3	9.6	1.2	1	23	728	750	728	750	0.98
11	15	1.3	3.6e+02	4.3	0.1	1	23	807	829	807	829	0.94
12	15	0.04	11	9.1	7.0	1	23	835	857	835	858	0.96
13	15	0.06	16	8.5	0.7	1	23	863	885	863	885	0.99
14	15	0.00088	0.24	14.3	3.0	1	23	891	913	891	913	0.97
15	15	3.8	1e+03	2.9	4.3	1	23	919	942	919	942	0.96

Sequence Information

Coding Sequence: ATGTGGAACCTCATTCTTTGTTTCCGGCCGGGCGTGGCTCGAGCCCCGAGTAGCCCGTCGGTCGAAAGCTCCACTCAGGAGCCAATAAACCACTCTGGTGATGGTTACTTTTGTTCCTGCCATGTCCGTGGGTATAACAGCAAACATCAAAAGCTAATCTCTTATCCTGATAACATTCCATCGGCCATACGTCCCGTTCCTCATGGATCTGATGTGCCAGTGCCTCCAACTGAATTGCCAGTCATCTCTTCAGACTCGGAACATCCAGAAGTTCAAGGCTCCGATACCGAAAATAAGCCCTCTGGAGGTGATTCTCCTCAGCCCTTCTCTCAGGTTGAACTTAATGATCTGACTAGAGATCTGGACTTTTCGAAAGAGGCAACTGAATTGAACCAAGAAAAGGAATTTGTTAAGTACTTTGAGGAAGAGGAGAACCTGGTCTATGGTTCTGATGTTCCCGGATTGATGAGCAAATTGGATATCACATACGATAAAGATGAATGGAGGCTGTTTATAGATTCATCGAAAAGGAGCCTTAAAGCTATCCTTCACGGAAGCCAATACGCATCTGTACCAGTTGGACACTCGGTGCATTTAAAAGAACGCTATGAAAACCTGGTTCTCGTCCTCAAAATAAACTATGCCGACTACGGTCGGACCATTTGCGGTGATTTGAAGGTTATCTCCATGCTTCTTGGTCAACAAGGCGGATCCTCTGCATATAAAATGAGCGTGACGACAAAGGAAAGAGAAGCTTTGGTTGCCTTCAAAGATGTTGTCAGTGAATTTCTGGGTAATTACGAGGATCCCGACTATAAAGCAATTGTTATGAATATGCTGGACCAGTTTCAAGCGTCGGGTCGCTTCATGCGTGACCAAATACATTTCCTTCACTCACATGTGGAACAGTTTGACTCGAATTCAgacgacggggagatagaggcgAGCAAGTGCGCTTCCGATGTCGGAGAGGAGCCGTTCCCGAGGGAGGAAGAAGACTGGATGTACGAGTTGTACTGCGCTGACCAACAGTTGGAGTATGACACTTTCCTTGAAGAAGATGCAAATGTTGGATTGTTTGATTGGGAAACCTGCGCAGAGCGACACGACCAAGCCCCCGAGAACTGTGTACAATGTGGCTTCACGGTGTCGCCAGAAGACGCAAATGTCGGATTGTTTGGTTGGGAAACCTGCGCAAAGCGACACGACCAAGCCCCCGAGAACTGTGTACAATGTGGCTTCACGGTGTCACCAGAAGACGCCTCGGTCCAAGTGGTCACGGTCCGGCCCAGACGCAGAGCGGAAGTCGACGAACGGTTGATCGAGTATGCGTGCAACATCTGCGACAAGTCATTCCCGCGCGTCGGTCTGCTCACCTCCCACCTCAAACTGAACGTCTTCAGATGTCTCATCTGCGGGATCTGTTTCAAGAAGAAGTCCAAGCTGGACAGACACTGCCAAGAGTTCCATTGCGAGGTGGTCGTCCCGTTTCACAAATGTCAAGTCTGTTTGAAGACATATCCTTCTAGGAAGTCACTCGTCAATCACCAAAGATTGTTCCATTTACCAAAAATCTATTTGCAGTGCAATGTTTGCAACTCAACTTTTGAACACGAAGGAAAGTTACGTATGCATCAGGCGGATCATTCGAAACACGACTCGTTGTTTACATGTACACAATGTGTTGAAACATTCTATACTAAGACAGGACTTATATGCCACACCAAAACTCACAAAGGTTACGAGTCGAAGAAGTGTTTTGTTTGCGACAGAACGTTCCCTTTGTACTGTCCTTCAGAAAATACCCACCGGAAGAACCACCACGGTCAGCACCGATCCAAACTCAGACAAAAGTGCAATATCTGTGGGGCCGAGGTTCGGTTCCTCAAGGCCCACCTGGAAATACATTCCGACGACCCGCGCTATCAGTGCGAGTCTTGCGGGGCTTGCTTCACCACGAAGAACGCCCTGAGCGGCCACAAGTACAAAGCTCACTCGAAGAAGAACAACAACTATTGTTGTGACCAGTGCGGGAAATTGTTTGGTTCGTACGATCGACTGGACAGTCACAAGAGGAGTCATTCGGGGAATCGTGACTTCCTCTGCGACAGGTGCGGCCTGGCGTTTATTTTCCACACCAACTTCCGGCGCCACATGTTGAATCACGAGGGCCGGAAGTTGTTCAAGTGTTCCTTCTGTACCTACGTCGCGTACCAGGCGAAGAGTCTCGACCGTCACTTGCTACGCCACAAAGGAAACGAACCGTACATCTGTCTCCAGTGCGGGTTCCGTACGGCCCACCATCACGTCTTGAAACTCCACAAGAAGTCGGTACACCACAAAGCTAAAGTCACTCGAAACAGAATGGCTGTAAAGTGGAAACAGGTGAACCGAGTCCCGGTGGAGAAGCAGCCGTTTTACAACTGTGATCTGTGCGACTACGTGTCGGTGAACCTCATCGGGATCAAGGAGCACAAGTTGATCCACACTGGGGAAGGTCAGTACAAGTGCAACGAGTGTAGGTTCACCTGTAGTCAGACGGCTCGCTTCATAAAGCACATGAACAGTCACCACGGGAACGGGAAGTACCAGTGTGACTCGTGCTCGTTCAGCGTGAACCAGATCACGTTCCTCAAGGAGCACATCAAGGTTCACGACGACGTCCGTCCCTTTTCCTGCGAAAAATGTGGCTTCGCTTGCAAAACCGAGAGCCTGCTAAACAAACACCGGTTTGTCCACGGGGACGTGAAAGCGTTTGAGTGCTCGCTGTGCCACAAGAAGTGGCTAAAGAAGCGAGAACTGACGAGACACGTCAAGAGAAAGCACCCGCAACATCTAGAAACAAACGATAAACTGGAGAGCTCGAAGCAGCGCGCGGGGAAAGACGTCGGCTCGTTTTATGTGAACGGACAACTGAACAACAAGTCCGCCAACTTGAAGAAGCGCTTGAAGGAGAAACATCTCAGACTGAGCAGCAGGGGAGGAAACACGAGAGGCCGGGTCGAAGGAAACCATTCAGTTTCCACGACTTTTGGAGCCAAGCTAGGTAACTATCCTCCTGATTACCATAGTGGAGCCGAGCAAGGTAAATATCCTCCTGATTACCATAGTGGAGCCAAGCAAGGTAACTATCCTCCTGATTACCATAGTGGAGCCAAGCAAGGTAACTATCCTCCTGATTACCATAGTGGAGCCAAGCAAGGTAACTATCCTCCTGATTACCATAGTGGAGCCAAGCAAGGTAACTATCCTCCTGATTACCATAGTGGAGCCAAGCAAGGTAAATATCCTCCTGATTACCATAGTGGAGCCAAGCAAGGTAAATATCCTCCTGATTACCATAGTGGAGCCAAGCAAGGTAAATATCCTCCTGATTACCATAGGGGAGCCAAGCAAGGTAAATATCCTCCTGATTACCATAGGGGAGCCAAGCAAGGTAAATATCCTCCTGATTACCATAGTGGAGCCAAGCAAGGTAACTGTCCTGATTACCATAGTGGAGCCAAGCAAGGTAAATATCCTCCTGATTACCATAGTGGAGCCAACCAAGGCCAAACCGCCCGGTTCCAAACGGAAGCCATACGAGTGGCGCACTCTGCCGCACATGCTGAAGATACCTGCGCACCCAACAATGTGTCGCCAGCTGCCCGACCTGTTGACCAGGCAATCCTCGGCGCCCAACAACACCAAAGTGATCATCATCATGTCGGGGAAGAAGAAGATGCAGCGTCGTTGCTTGAAGATCCAAGGTACAGAAGTGGGACAGTCGTTCCCCGGCGTGCGGCTGAACCAGACGCTCAAGGAAGGACCGAACTGAACCAGACGCTCAAGGAAGAACTAAACTGA
Protein Sequence: MWNLILCFRPGVARAPSSPSVESSTQEPINHSGDGYFCSCHVRGYNSKHQKLISYPDNIPSAIRPVPHGSDVPVPPTELPVISSDSEHPEVQGSDTENKPSGGDSPQPFSQVELNDLTRDLDFSKEATELNQEKEFVKYFEEEENLVYGSDVPGLMSKLDITYDKDEWRLFIDSSKRSLKAILHGSQYASVPVGHSVHLKERYENLVLVLKINYADYGRTICGDLKVISMLLGQQGGSSAYKMSVTTKEREALVAFKDVVSEFLGNYEDPDYKAIVMNMLDQFQASGRFMRDQIHFLHSHVEQFDSNSDDGEIEASKCASDVGEEPFPREEEDWMYELYCADQQLEYDTFLEEDANVGLFDWETCAERHDQAPENCVQCGFTVSPEDANVGLFGWETCAKRHDQAPENCVQCGFTVSPEDASVQVVTVRPRRRAEVDERLIEYACNICDKSFPRVGLLTSHLKLNVFRCLICGICFKKKSKLDRHCQEFHCEVVVPFHKCQVCLKTYPSRKSLVNHQRLFHLPKIYLQCNVCNSTFEHEGKLRMHQADHSKHDSLFTCTQCVETFYTKTGLICHTKTHKGYESKKCFVCDRTFPLYCPSENTHRKNHHGQHRSKLRQKCNICGAEVRFLKAHLEIHSDDPRYQCESCGACFTTKNALSGHKYKAHSKKNNNYCCDQCGKLFGSYDRLDSHKRSHSGNRDFLCDRCGLAFIFHTNFRRHMLNHEGRKLFKCSFCTYVAYQAKSLDRHLLRHKGNEPYICLQCGFRTAHHHVLKLHKKSVHHKAKVTRNRMAVKWKQVNRVPVEKQPFYNCDLCDYVSVNLIGIKEHKLIHTGEGQYKCNECRFTCSQTARFIKHMNSHHGNGKYQCDSCSFSVNQITFLKEHIKVHDDVRPFSCEKCGFACKTESLLNKHRFVHGDVKAFECSLCHKKWLKKRELTRHVKRKHPQHLETNDKLESSKQRAGKDVGSFYVNGQLNNKSANLKKRLKEKHLRLSSRGGNTRGRVEGNHSVSTTFGAKLGNYPPDYHSGAEQGKYPPDYHSGAKQGNYPPDYHSGAKQGNYPPDYHSGAKQGNYPPDYHSGAKQGNYPPDYHSGAKQGKYPPDYHSGAKQGKYPPDYHSGAKQGKYPPDYHRGAKQGKYPPDYHRGAKQGKYPPDYHSGAKQGNCPDYHSGAKQGKYPPDYHSGANQGQTARFQTEAIRVAHSAAHAEDTCAPNNVSPAARPVDQAILGAQQHQSDHHHVGEEEDAASLLEDPRYRSGTVVPRRAAEPDAQGRTELNQTLKEELN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -