Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010001588.1:109431-112093[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.91 2.5e+02 4.8 0.0 2 23 80 102 79 102 0.88

2 14 0.061 16 8.5 0.1 3 23 322 343 320 343 0.94

3 14 0.48 1.3e+02 5.7 1.9 3 23 358 378 357 378 0.95

4 14 0.00016 0.043 16.7 0.3 1 23 407 429 407 429 0.97

5 14 7.8 2.1e+03 1.9 3.6 3 23 451 469 449 469 0.78

6 14 3.9 1.1e+03 2.8 0.3 3 20 479 495 478 497 0.87

7 14 0.13 35 7.5 0.3 3 23 509 530 508 530 0.93

8 14 0.00086 0.23 14.3 5.2 1 23 536 558 536 558 0.98

9 14 0.0013 0.34 13.8 5.1 1 23 564 586 564 586 0.96

10 14 7.7e-05 0.021 17.6 1.3 1 23 594 616 594 616 0.97

11 14 0.0011 0.29 14.1 0.3 1 23 622 644 622 644 0.97

12 14 0.038 10 9.2 4.7 1 23 650 672 650 672 0.87

13 14 0.054 15 8.7 7.5 1 23 676 698 676 698 0.98

14 14 0.0013 0.35 13.8 0.6 1 21 702 722 702 723 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.91	2.5e+02	4.8	0.0	2	23	80	102	79	102	0.88
2	14	0.061	16	8.5	0.1	3	23	322	343	320	343	0.94
3	14	0.48	1.3e+02	5.7	1.9	3	23	358	378	357	378	0.95
4	14	0.00016	0.043	16.7	0.3	1	23	407	429	407	429	0.97
5	14	7.8	2.1e+03	1.9	3.6	3	23	451	469	449	469	0.78
6	14	3.9	1.1e+03	2.8	0.3	3	20	479	495	478	497	0.87
7	14	0.13	35	7.5	0.3	3	23	509	530	508	530	0.93
8	14	0.00086	0.23	14.3	5.2	1	23	536	558	536	558	0.98
9	14	0.0013	0.34	13.8	5.1	1	23	564	586	564	586	0.96
10	14	7.7e-05	0.021	17.6	1.3	1	23	594	616	594	616	0.97
11	14	0.0011	0.29	14.1	0.3	1	23	622	644	622	644	0.97
12	14	0.038	10	9.2	4.7	1	23	650	672	650	672	0.87
13	14	0.054	15	8.7	7.5	1	23	676	698	676	698	0.98
14	14	0.0013	0.35	13.8	0.6	1	21	702	722	702	723	0.95

Sequence Information

Coding Sequence: ATGCGCCTCATAGTCTTGGCCTTAAGACCGCCCGAGCACCAGCGGCCAACAAGCGTGGGCAGTCGCGGCCAACTGGGTGTGTCTCTTGCATTGATCGCGGAGCAAGTAGCCGCTATGTTGTACCTCCTCAACAAGATAGTCCCAACGAGTGGTTTGGAATGTCCCCTGTGCTGCAAACATCAGCTCTCATTCGAGGAATTAAAGAAACACTTGTCGATATATATCTGGGGGTTCCTGCAGTGTCCGGTGTGTGGGGAACTGTTGATCGGGCTGGAGAAGCTCGCCCAACACCTTGACAACCGTCACTGTGAGACTGGTGACCAGATATCGACAACGAGCAAGGGTCTCTGTGACAATGAAGCGTTGGAGAAGAGTTCCGACTCGATTAGTTCACACAGCGCAGCCAGCTCAATAGGGCGTAGCATACCAACTAGTATTAAATTAGAAGAAGATGACATAAACGACACTCTACAAGACGTAAACAGTTCTATTCATAAATTCAGAAACGATGCTAATACTGTGTTTGGGAAGGTGGAAATTCCTGATAATACGGATCCTCTTATCACCGAAGATATTAACTCCTCGCGGCTTTTTTGCAAATCTGATACGACtataataaaagataaagtATCAAACTCGTTGAACAATCCAAATAACTTGCAAGAGCACGCAACGAATGCTCACAACATGAACAATATTGTTGTTAATGTTCCGAAAGAGCTGTTTCCTGAAGTGCTGCCGTCTAGCAAAAGGAAAGTGGTAAAGATTCACGGTCAAACGATAACTCTACAACCAGATTTATTGTCAGACTCGGACATGAAACAAACCTCGCCCGACGGTCAAGCGTCTGACAAGAAGAAAACTCAGGAAAAGATGTGTCATATCTGTGGCGGGACGTCTCGCCGCAATTTTCCGTCCAAGCGGCAGATGTACGTGGACAAAGAGTCGGACCAGAGGGTGATATGTAGCGTGTGTGTAGCTTGTTTCGGAGACGAGGATCTCTTAGCTAGGCACGGTAGGGAAATGCACGCAGGGCTTGAAGTTTTCAGACCCCACCTAAGGAATAAGATTTGCCAACTCTGCGGGAAAGTTTTATTCACGCACAACATTTCCCGCCACATGAAAAGTTCTCACGGCATAGACGGGGCGGTACGCTCAATTTGTCAAGATTGTGGCAAAGTTAACTGCTCTGAAACGCTACACAAGACTGATCTAAGTTATACGTGCAAGGTATGTGGTGAAAACTTTTCGACTGTGGTCGCCCTGCGTTCACACTCGTCGTCTCATGTGGAAATCTCAAACGAGAATGAAGTCTTCAGTGAAACTTTGCCTAGACCGAAAGTctctgtttgtaaaatatgtggAGAAGCGCGGTCTAACATGAGAAAGCACATGGTGACATGTCACAAGGAAACATCGCAAGAATCTGTCGCTTGCCCGGACTGCGGCGATATATGTAGCAAGAACAAGTTGAAGGCTCACAGGGCAGAATGTCCCAAGAAAGAATCCGACGAAGCCGTGGCATGTCCGGACTGCGGTAAGATGTGGGGAAATAAAAAGAAGATGAAGCTACACAGAGATCGCGTTCACCTCCGGATATTGCGTTTCGTCTGCCACGAGTGCGGTAAGAAATTCTTCTGTAAGAGCGGACTCAACACGCATCTGCTGACGCACTCGAAGGTGAAGAAACACGAGTGCAAGTTTTGCAGCAAACGTTTCTCTTCGAAAACCAACTTGGACACCCACGAGTCTAAACACCTGGGGAAGAAGGAGAGTCCGTTTATTTGTAGCTATTGCGGGCGCTTGTTCACCAACAAGCTATATCTACAGAACCATGAACGGCTCCATAAGGGCGAGCGTCCCTACGCCTGCAAGATCTGCGGCGCCAAGTTTGCCGGTCTGTCGACTCTGTACAGTCACAAGTACACGCACACGGACGAAAGGCCGCATCACTGCAACATGTGCGGGAAATCGTTCAAGACGACGGCCGCGTTGTACTTCCACAAGCAGCAGCATTCAAAACAACACAAGTGTGACGTATGCTGTCGGATGTTCAGCTATGTGCACAACTTGAAGCAGCATCTACTAACTCATACTAAAGACTACAGTTGCTCAGGGTGTGGGGCGCAATTcaagtcattaaaaaaactgcaagtTCATGAAAGACATGGATGTAGGCCTGGTTAG
Protein Sequence: MRLIVLALRPPEHQRPTSVGSRGQLGVSLALIAEQVAAMLYLLNKIVPTSGLECPLCCKHQLSFEELKKHLSIYIWGFLQCPVCGELLIGLEKLAQHLDNRHCETGDQISTTSKGLCDNEALEKSSDSISSHSAASSIGRSIPTSIKLEEDDINDTLQDVNSSIHKFRNDANTVFGKVEIPDNTDPLITEDINSSRLFCKSDTTIIKDKVSNSLNNPNNLQEHATNAHNMNNIVVNVPKELFPEVLPSSKRKVVKIHGQTITLQPDLLSDSDMKQTSPDGQASDKKKTQEKMCHICGGTSRRNFPSKRQMYVDKESDQRVICSVCVACFGDEDLLARHGREMHAGLEVFRPHLRNKICQLCGKVLFTHNISRHMKSSHGIDGAVRSICQDCGKVNCSETLHKTDLSYTCKVCGENFSTVVALRSHSSSHVEISNENEVFSETLPRPKVSVCKICGEARSNMRKHMVTCHKETSQESVACPDCGDICSKNKLKAHRAECPKKESDEAVACPDCGKMWGNKKKMKLHRDRVHLRILRFVCHECGKKFFCKSGLNTHLLTHSKVKKHECKFCSKRFSSKTNLDTHESKHLGKKESPFICSYCGRLFTNKLYLQNHERLHKGERPYACKICGAKFAGLSTLYSHKYTHTDERPHHCNMCGKSFKTTAALYFHKQQHSKQHKCDVCCRMFSYVHNLKQHLLTHTKDYSCSGCGAQFKSLKKLQVHERHGCRPG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447898;
90% Identity: -
80% Identity: -