Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010001354.1:127603-132858[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00013 0.036 16.9 1.4 1 23 183 205 183 205 0.98

2 8 3.3e-05 0.0091 18.8 1.2 1 23 211 233 211 233 0.98

3 8 0.0034 0.94 12.5 3.3 1 23 239 261 239 261 0.96

4 8 0.0004 0.11 15.4 2.4 1 23 267 289 267 289 0.97

5 8 0.0014 0.39 13.7 3.3 1 23 295 319 295 319 0.98

6 8 0.0034 0.93 12.5 0.3 1 17 325 341 325 342 0.91

7 8 0.011 2.9 10.9 5.2 1 23 569 591 569 591 0.98

8 8 0.053 14 8.7 0.0 1 21 595 615 595 618 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00013	0.036	16.9	1.4	1	23	183	205	183	205	0.98
2	8	3.3e-05	0.0091	18.8	1.2	1	23	211	233	211	233	0.98
3	8	0.0034	0.94	12.5	3.3	1	23	239	261	239	261	0.96
4	8	0.0004	0.11	15.4	2.4	1	23	267	289	267	289	0.97
5	8	0.0014	0.39	13.7	3.3	1	23	295	319	295	319	0.98
6	8	0.0034	0.93	12.5	0.3	1	17	325	341	325	342	0.91
7	8	0.011	2.9	10.9	5.2	1	23	569	591	569	591	0.98
8	8	0.053	14	8.7	0.0	1	21	595	615	595	618	0.89

Sequence Information

Coding Sequence: ATGGAGACCAGTGTTGTTGAAGGATCAAACAAACTCGCGTCTTCAAAAAGTGTTCCCTCGGAACAAGATGGCGCTGTCGGGTCGGACGCTGTTGATAAGAAAAAGAACAACGTCTTGCATTGCTTGATCTGCAACGCTGATCTGGCACCAGGCACTGACACTACCTACAACGTCCACAGTGCGCTGAGCGCGGACGATCCCGACCTGCGCTTCGAGAAGACCTCTGTACTGGATCATCTGCGCAGGATACTGGAGCGTCCTATCACAGTCCACATCCACAGCGACATTGTGTGCGCTGAGTGCTTCAAGTTGACGCTCGAACATGCTGCGGCAGAGGTACGTGTGCGGCTCATGCGCACTCGAGTTCTCACCAGATATGAGCGCACTGAACAGTTATACCTGGCACTCGATCTAAAGGACAAGAATCCTGACAAGATACACAGGAATGGGCTGGTGATAACCCAGGAGGGTACACTCGTGGACACACACTGTAAGGAGAACAATGCGAGCCTCTTCAAGACGCCTAAAACCAAACACGAGCGCAAGTTTGAGTGCAAGGTTTGCGGGAAGAGTTTCCGTGCGTTCAGCCACCGCGTGGAGCACATGCTCATACACATCAACGAGAAGCCCTTCGAGTGCGCCGAGTGCTTCCGCTCGTTCAGGACCAAGAGCTCCATGCGGGCGCATGCCATGAAGCACACAGGGGAACGCCCACACGCCTGCAAGACGTGTGGCAAACGCTTTCAGGATCACTACTACATGGCCGAACACGAGCGCATCCACTCGGGATCCAAGCCGTTCCAATGCTCTTTCTGCCATCGAGCGTTCATGCGCAAGAAAGATTTGGCCTTACACGTCAAAGGTCACACAGGTGACAAGCCCTACAAATGTGGTCACGGGACGTGTGACAAAGCGTTCGCCGTCAAGTCCCGGCTCCATCGCCACACCAAGATCCATTCCGGAGAGCGTCCGTTCCCGTGCAATCTCTGCGACAAGAGCTTTGTTCGACGCGATGATTACCAGCTTCGTGTGAACAGCCCGGCTGGGCTACTCACCGAGAGCTGGCATGTCCACGGGCCTTGTAGTGTTTGTTGCCGAGGCTATactgacggggagatctgggttcgaatctcggtcaggctCCTAGATAACTCTGACTCAGCCATTCCCTCGTGGCCTCTCCTCAGAGATATCTGCAATCCATCATGCAGTATCACAGACAATCATATTAGCTTATGGGTAAGAATTGTATGTCCACCTCGTGTGAGTAGCGAGGGTCCACCTCGTGTGACTAGCGAGGGTCCACCTCGTGTGACTAGCGAGGGTCCACCCTGTGTGACTAGCGAGGGTCCACCTCGTGTGACTAGCGAGGGTCCACCCCGTGTGACTAGCGAGGGTCCACCTCGTGTGAGTAGCGAGGGTCCACCTCGTGTGAGTAGCGAGGGTCCACCTCGTGTGAATAGCGAGGGTCCACCTCGTGTGAGTAGCGAGGGTCCACCTCGTGTGAATAGCGAGGGTCCACCACGTGTGAATAGCGAGGGTCCACCACGTGTGACTAGCGAGGGTCCACCTCGTGTGAGTAGCGAGGGTTCACCTCGTGTGAGTAGCGAGGGTCCACCTCGTGTGACTAGCGAGGGTCTATCTCGTGTGACTAGCGAGGGTCCACCCCGTGTCCACAATCGACTTCACACGGGCGAACGTCCCTTCTACTGCTTGTACTGTGCCAAGACGTTCACCAACCAGTCCAACTGCCTCTATCACGTCCGCAAGCACAAGGGTGTGTTCCCCTGTTGGGTGTGCGGGGCCACATTCCAAGTGCGCGGCCTGTTGGATCGACACGCGGCCGATGTGCACATGATACTGGATCCTCGAGTGGTGGATGCGCATAGTAAACCAGACACACAACCGGTGAATGCCGGTGGTGTTCCCGAGGACGCTCACGGTGTATTAAATGTTCAAGCAGTGACCAATAAGGGTGATCTAGATGGTAGGACAATTTTGGAGACCCCGAGCATGATAAACACTCACACGCTGTTAGACATGCAGCTGGTGACGGGTTGTCCAGGGGAGCAGGCCCCCAATATCACGGTCACAGAGCTGGCTGCTATCAACACAGTCCAGGTGGCGTGGAGTGACGGTAGCTCAGGAACAGCTTACGTCAACTTACCACCGGGCACATTCATCATCGACTGA
Protein Sequence: METSVVEGSNKLASSKSVPSEQDGAVGSDAVDKKKNNVLHCLICNADLAPGTDTTYNVHSALSADDPDLRFEKTSVLDHLRRILERPITVHIHSDIVCAECFKLTLEHAAAEVRVRLMRTRVLTRYERTEQLYLALDLKDKNPDKIHRNGLVITQEGTLVDTHCKENNASLFKTPKTKHERKFECKVCGKSFRAFSHRVEHMLIHINEKPFECAECFRSFRTKSSMRAHAMKHTGERPHACKTCGKRFQDHYYMAEHERIHSGSKPFQCSFCHRAFMRKKDLALHVKGHTGDKPYKCGHGTCDKAFAVKSRLHRHTKIHSGERPFPCNLCDKSFVRRDDYQLRVNSPAGLLTESWHVHGPCSVCCRGYTDGEIWVRISVRLLDNSDSAIPSWPLLRDICNPSCSITDNHISLWVRIVCPPRVSSEGPPRVTSEGPPRVTSEGPPCVTSEGPPRVTSEGPPRVTSEGPPRVSSEGPPRVSSEGPPRVNSEGPPRVSSEGPPRVNSEGPPRVNSEGPPRVTSEGPPRVSSEGSPRVSSEGPPRVTSEGLSRVTSEGPPRVHNRLHTGERPFYCLYCAKTFTNQSNCLYHVRKHKGVFPCWVCGATFQVRGLLDRHAADVHMILDPRVVDAHSKPDTQPVNAGGVPEDAHGVLNVQAVTNKGDLDGRTILETPSMINTHTLLDMQLVTGCPGEQAPNITVTELAAINTVQVAWSDGSSGTAYVNLPPGTFIID*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -