Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010001915.1:13480-20813[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0032 0.86 12.6 0.1 2 21 32 51 31 52 0.90

2 15 0.61 1.7e+02 5.4 0.5 1 12 197 208 197 217 0.88

3 15 1.6e-06 0.00044 22.9 1.2 1 23 530 553 530 553 0.97

4 15 0.28 77 6.4 1.7 2 23 579 600 578 600 0.94

5 15 5.8 1.6e+03 2.3 1.7 3 23 620 640 618 640 0.87

6 15 0.26 71 6.5 4.2 2 23 669 690 668 690 0.97

7 15 6.6 1.8e+03 2.1 0.3 1 10 724 733 724 745 0.73

8 15 0.00021 0.058 16.2 0.9 1 23 751 773 751 773 0.98

9 15 0.0012 0.33 13.9 2.1 1 23 779 801 779 801 0.96

10 15 0.0064 1.7 11.6 0.5 1 23 807 829 807 829 0.98

11 15 0.17 47 7.1 2.7 1 23 835 857 835 857 0.92

12 15 0.00029 0.08 15.8 4.4 1 23 863 885 863 885 0.98

13 15 2e-05 0.0053 19.5 1.0 1 23 891 913 891 913 0.98

14 15 0.066 18 8.4 1.9 1 23 917 939 917 939 0.95

15 15 0.00077 0.21 14.5 0.2 1 23 948 970 948 970 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0032	0.86	12.6	0.1	2	21	32	51	31	52	0.90
2	15	0.61	1.7e+02	5.4	0.5	1	12	197	208	197	217	0.88
3	15	1.6e-06	0.00044	22.9	1.2	1	23	530	553	530	553	0.97
4	15	0.28	77	6.4	1.7	2	23	579	600	578	600	0.94
5	15	5.8	1.6e+03	2.3	1.7	3	23	620	640	618	640	0.87
6	15	0.26	71	6.5	4.2	2	23	669	690	668	690	0.97
7	15	6.6	1.8e+03	2.1	0.3	1	10	724	733	724	745	0.73
8	15	0.00021	0.058	16.2	0.9	1	23	751	773	751	773	0.98
9	15	0.0012	0.33	13.9	2.1	1	23	779	801	779	801	0.96
10	15	0.0064	1.7	11.6	0.5	1	23	807	829	807	829	0.98
11	15	0.17	47	7.1	2.7	1	23	835	857	835	857	0.92
12	15	0.00029	0.08	15.8	4.4	1	23	863	885	863	885	0.98
13	15	2e-05	0.0053	19.5	1.0	1	23	891	913	891	913	0.98
14	15	0.066	18	8.4	1.9	1	23	917	939	917	939	0.95
15	15	0.00077	0.21	14.5	0.2	1	23	948	970	948	970	0.96

Sequence Information

Coding Sequence: ATGGGGACGTATATATGTCCGCTGTGCTGTGGAGGTGAGTTCTTGTCGCGGGACTCCTTGAGGGACCACCTACTGTGCTACACGGAGAGCCTCTACTGTCCAGAGTGCGGCAAATGTTTCGACAGTGTTGCCCGACTGGTGGAACACCTGGAGACCGCCTGCGACGAGGCCCATGCGGGGCACCACGACTCTACAAGGGTCACTCGTACACAAAAACAGAGCCAAGTCAAAGCAGAACCAAACTACAACTTTTCGTTCAGTCGTATTCGAAGCAAAATAAAAGGGGAAGAGACTTTCCTCATGGATCTTGGGGACTATAATGAGGACGATGACGAAGACGATGAAGATATCccggaaaacaatatttatttccctAACAATATCTCAGGAGATGTCATTGATATCTCAGACAACAACGCCGATAGCTCGGAAAGCGACGCCGACAGCTCGGAGGACGATCTTTCGGAAGGCGATCTCTCGGAAGATGCTGATATCTCGGAGGACGACGTTGATTGGCGCAGCGAGCAGGTCAGGCCGGAGAGTAACGGCTCTGTCGAGAGTTTTGCGCACCCATCCCCCGCACCCATGTTTAAGTGCTCCGTGTGTCCGTACGAGTTCACGTCCGTCGAGGAGCACATAAAACTGTATCACACCCAAGACGAGGTTGAACTACAGGTCCCAAAGGAAGtttcaaaaaaccttttaaaagacGGAGAAAACGTGATCAAGCCAATTTCAAACAACCAGGCAAGTGCCGATGAAACTACTACTGATCAAAAGTTACTCCCTGATCCAAATAATGACCTTGAAATTCCGGGCGACCGCCGAAGGGGAGACGTGGAGATGGTTGGTGACCATCAAAATAGTCCCCCCGAACTGGAAAAAGATCCCGTGCAATGTGAACCTCAAGATCACGGTCAGGCAACTATTGATCATGGTACTCTCCCGAGTTCCTTGGGTGAAATAGTGTCTCAACTTTCTTTAGAACCTCAGATCAAAAACCTAGTTAGTGAGTGCGATTTCGACAGAGAAAATCCTGCCGTAAACTTGCAAGGCGCAACTAAGGAAGCTTTGGTAACACCCAACGACCATTACGAACAGGACGCAGCATTAAGGCCCATATCAATGCCACAAAAACTAAGCAaaccagttaaaaaaataaactctcatCCGAAAATAAATGTGCCAtcggaaaaaaataatagatcaaGTATTTTTTCCAATTGTGGCGACGATGTACTTGTCGAACACAAATTGACAGGGGAAAGACTCATTATGGACCCGAAAGGTTTAACTTATGTCAGGAAGCTTATTCCGTGTGGTGAGATCTATTGCACCACCAAGGAGAATAAACAAACGCTACCAACGGCGCAAACTCAACCTCAACCTCAAGAAGTTGAAGTAAAGTCAAAGAATAAATCCATTGATGATTACCCTCAAACGGTGACTTCATTCAGAGATTACACTGAGAGACGTTATTTCACTGAAACCGGTAAACGTCTGGGTTCCATATACACCTGCAAGGTATGCAACCGGGAGTGCCTCACATACCCGACCTTTAGGCATCACTCCTGCACGGCGATTGTTTATTCCTGTGATGTGTGCAATGAAACGTTCAGGCGAAAAAAAGACCTCACGAAACACTTGCTAAGTGAACACAATCTCCCGAATAGTTCTCTGAAGAAAAAGGACCGTTTGAAAACCAAGGATGTCTCCAAGCCGCCTCTATCTTTGGTCTGCGAGGCTTGCGGAACTGTCTTCAACAACAAGCGCTCCCATCTGCAGCATAAAAAAATGCACTTGCCTAAAATTGTCGACGTTGAATTTAACGAGGATGGCAGTCTAGCGGACCTGAATTGCAAATGCTGCACCTTTGTCGCGATGAACAAGAAAGGCCTTAGGACCCACATGATTGTGCACGCGCCGTACAAGAAGAGAAGGACGGAACCCACCTCGGAGGTGAGCGTGCAGGACCCGTCGACGATACTGACTGCCGACAACCTGACCTGCCACATGTGCGACCAGTTGTTCGAGCGGACCCTGGACCTCCACGAGCACTTCAAGACACATTATTACAACAAGGAGGACGAGAAGAGGGAACTGGCCAAGTTGAACAATATTACATTTGAACGCGCTAATATGGACAACCCTGAAAAAGCTTCGTTGACCTTCACATGCGAGATCTGCCACCTGACTTTGGACAAATCTATTCGCGTGAGCCATATCCTCTCACATTCCGGTGATGTGCGCTTCACTTGCGAGATATGCAACGGTAATTTCTACACCCGTGAACAATTCAACCTTCACATGCGCGCCCACAATGGGGACACACCTTACATGTGTAGAATCTGCAAGAAGAGGTTCGCCGACATGCATCTACTGGAAAAACACTCCGAGTCGCACAGAGAGAACAGAAACTACCCATGCCGGTTCTGTAGCAAGCGTTTTCAGAGGCCTAGCGGGACACTCGCCCACGAACGGATACACACAGGCGAACGCCCGTTCACATGCCAGCACTGCGGGTTAAAGTTTCGTCTGAGGGGGACGCGCGACATGCACAGCCGTATTCACACCGGTGTCAAACCTTATAACTGTGAACACTGCGGTATGAAGTTCAGGTCGAGGTATAGCTTCCACGCTCACGTTGCCACACATTACGACGCCCGCGACTTCAAGTGTACCATGTGCCCAAAGACCTTCAAGACGGCGGCGGGACTTTCCAGCCACAAGAACAACCACACAAAACCTTACGCTTGCTCCGTTTGTAAGCGCAAGTTCAACACCTCGTTTGCCGAACGTAAGCACAGGCTTTCTCATTCCACAGGGAAGAATATGCTCAAGTATGTGTGCGACCTGTGTGGGGCCTGCTACGCTCGGTCTTTCGGGCTCCGCGACCATCTGATTGCGCACAACGAAGAGGCAATGGGTAAGGTGCCCACCAGAGAAGATGCTACCCCTCAGAATATTAGAAATTCTTTGACGCCTGTAGTCGCCCCTAAACCTGTGCACTTTGTTGAAATTGAAGAGACAGTGTTGTCTAGTTAA
Protein Sequence: MGTYICPLCCGGEFLSRDSLRDHLLCYTESLYCPECGKCFDSVARLVEHLETACDEAHAGHHDSTRVTRTQKQSQVKAEPNYNFSFSRIRSKIKGEETFLMDLGDYNEDDDEDDEDIPENNIYFPNNISGDVIDISDNNADSSESDADSSEDDLSEGDLSEDADISEDDVDWRSEQVRPESNGSVESFAHPSPAPMFKCSVCPYEFTSVEEHIKLYHTQDEVELQVPKEVSKNLLKDGENVIKPISNNQASADETTTDQKLLPDPNNDLEIPGDRRRGDVEMVGDHQNSPPELEKDPVQCEPQDHGQATIDHGTLPSSLGEIVSQLSLEPQIKNLVSECDFDRENPAVNLQGATKEALVTPNDHYEQDAALRPISMPQKLSKPVKKINSHPKINVPSEKNNRSSIFSNCGDDVLVEHKLTGERLIMDPKGLTYVRKLIPCGEIYCTTKENKQTLPTAQTQPQPQEVEVKSKNKSIDDYPQTVTSFRDYTERRYFTETGKRLGSIYTCKVCNRECLTYPTFRHHSCTAIVYSCDVCNETFRRKKDLTKHLLSEHNLPNSSLKKKDRLKTKDVSKPPLSLVCEACGTVFNNKRSHLQHKKMHLPKIVDVEFNEDGSLADLNCKCCTFVAMNKKGLRTHMIVHAPYKKRRTEPTSEVSVQDPSTILTADNLTCHMCDQLFERTLDLHEHFKTHYYNKEDEKRELAKLNNITFERANMDNPEKASLTFTCEICHLTLDKSIRVSHILSHSGDVRFTCEICNGNFYTREQFNLHMRAHNGDTPYMCRICKKRFADMHLLEKHSESHRENRNYPCRFCSKRFQRPSGTLAHERIHTGERPFTCQHCGLKFRLRGTRDMHSRIHTGVKPYNCEHCGMKFRSRYSFHAHVATHYDARDFKCTMCPKTFKTAAGLSSHKNNHTKPYACSVCKRKFNTSFAERKHRLSHSTGKNMLKYVCDLCGACYARSFGLRDHLIAHNEEAMGKVPTREDATPQNIRNSLTPVVAPKPVHFVEIEETVLSS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447063;
90% Identity: iTF_01445154; iTF_01447063;
80% Identity: -