Tshe003770.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010000162.1:402627-407109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.7 2.1e+03 1.9 3.1 2 21 340 359 340 360 0.93 2 13 0.00018 0.049 16.5 0.3 2 20 366 384 365 386 0.94 3 13 0.052 14 8.7 0.6 1 23 392 414 392 414 0.98 4 13 0.0015 0.41 13.6 1.1 2 23 519 540 519 540 0.97 5 13 3.1e-06 0.00084 22.0 0.9 2 23 585 607 584 607 0.95 6 13 0.0018 0.49 13.3 1.0 1 23 614 636 614 636 0.99 7 13 1.7 4.6e+02 4.0 0.2 2 16 638 652 637 654 0.92 8 13 0.0024 0.65 12.9 0.0 2 23 708 729 707 729 0.96 9 13 1e-05 0.0027 20.4 0.7 1 23 757 779 757 779 0.98 10 13 8.3e-05 0.023 17.5 0.3 1 23 787 809 787 809 0.94 11 13 0.00089 0.24 14.3 2.4 1 23 828 850 828 850 0.98 12 13 0.0022 0.59 13.1 0.5 1 23 883 905 883 905 0.96 13 13 0.0058 1.6 11.7 0.2 1 23 912 935 912 935 0.92
Sequence Information
- Coding Sequence
- ATGTTTCCGAAAATTTCTCTGGAAACGTTTGAAAGCACGACTTCAAAAATATGGTGTCTGCAGGCAATCCAAATAAGCTCAATATCAAGTGCTTGTTTGATTAAAGAACACGCACCCGTGTTCAACCCAGTGTTGGAAGCTGGGGTATCAAAAGAAATCCCTCGTGCCTGCGTCCTAAACTGCCAGTCATCAAGAACATGCAGGCAAGCACTGGCCTGTTCCATACGGGTACCTCTGGATGGCTCTGGAACTGCCGGGAGCTTTTCTAAGCCAACTCCACTGGCGAGGACAGCCACTAGATCTACTTCTTTTTTCCACTGCAGCGTCAATTCTGTGTATGAGAATTCTTGCCCTTCCTCAAATCTCCAAGACGGTGTCTACTGTGGCTCCAATACTCTTCTTCACATCTTGGCTCTCTTCCAGATGGTGAAAATAGAGCTTTCTATAGAAGTCACGCTGTTGGAAGGATTACTGTTGGTTTCCCAACTGACCACACTTCAGCTGAAGTCCTTGTGGGCTTGTTGCCTGTTGCAACCTACTTGTCTCCAGTCCCCTACTCAACCGAACCTCTGGTCGTTATCGCAGATCAAGAAAGAGCCAGGTCTGGGTAGTGTGGTGCAACATAAGACACCTTCGGGGGTACACATCACCTTGCAACAAACTGCCCCTGTCGCTGCTACTATTGTCCGGGCTAATCCTCCCCCTGCCCACTCTAATCCTCCATCTGCCCGCTCTAATCCTTCTCTTGCCCAGTCTAACCCTCCTTCCACTAACTCTAATCCTTCTCTTGCCCGTTCTAATCCTCCTACCCGCTCTAATCCTTTTCTTGCCCGTTCTAGCCATCCCGCCTGCTCTAATCCTTCTCCTGCCCGTTCTAACCCTCCCTCCACCCGCTCTAATCCTCCCTCCACCCGCTCTAATCCTCCTCCTGCCAGTTCTAATTCTGCTGTTACCCCCCCTATTGCTTCTCCACAACCATCCTCCCTCAAAAACGTTCCTTTGGACATCAAACCCCGCAAGTGTAAGACGTGCCACTTTGCCTCCACCAGCCGAGAAGAAATGGACCAGCACCTCTGCTCGTTTCAGATGTCGTGGCAATGTAACATCTGTCagaagtatttttataacaagGGCAACCTTTTGAGACACAAAGGTGTTTGTAAATCCAAGTCTTACAAATGCACGCAATGTAGATTGAACTTTGGTTCACTCGAAAAGATGGCGCAACACAGAATAATACATACCAAAGTTCTGGCCTATGTTAGAGACGAAGATATGTCTGTCTGTTCCTGCGGCAAAAAGTTTGGGTGCAAGATGATGATGAGGATCCACAAACGGTATCACCACTCCTACCCCAGAACTGAGTCGCCGGCCGGCGCGAGTATTAGGAATGGGACGGATCGATTCTCAGGGAAGaaaaaaaagcGCGACGCTCTAAAGGCAGCGGCTGAGGTCGATCACGTGAATGACGCTGAAGCCAAGGCGCCGCCACAAATCGATAAAGAGATTCAAAACAGAATGGGCCACTTTATGCCGGGGGCTTGGAATAATCGCGTTTGTAACCTTTGCGGAATGGGTTTCGATAACGAACGCAAGTTCAAGAACCATAAACGAATGCACTATAGGCTTCGTCGTTCGATGGCAAAAAAGGAGCGCAAAAACTTAGAGGCGGAACAGACGAAAGGGCCGGAGGCCTCCGAACCTGCGCCACCGACTATGACCAAAGATTCCAAGACCTGGTTCAGGAAGTGCAACTGCAAATACTGCGGGGAAGAGTTTCCGAACTCCTCGGCGTTGATCGCGCACATGCGTCAGAAGCACGCCTTGATGAAACCCACCTTCAAGTGCGAGGAATGTCACAAGGTCATCATGAACCGCGGAGGTTACATAACTCACATAAAGTCCCACAAGGTGTGCAAGGTCTGTCTGAAGCTGTTCTCGTCGTTGGACCACCTGGCGTACGGGGGCGTCCCGAAACGGTCTTGCCACAAGTGCTTGCGATGCAACTCTCTCAAATTCACGACCAGGCCGGCGTGGCTGGCCCACTGCAAGATGCACGCGGCTAGTAAGCTGGGCAGGCTATCATCGACCATAGTGAACGCTTCTAGAGCGGCGGTTGTCCCGTGCAGTTTTTGTAACGAGATGTTTCCTGACCCGGCGGCTCTGGTTAGCCATCTCGAGATTCACGTCGGGAACAGCTCTAGTTCGATGGGGGCGACAATGGGAGAGGCGACAGCAGAACCCAACAAAGTCAACCCTCTGTTGATCTACTCCTGCACGACTTGCGGCAACGCTTTCAGTTCCAAGGACGCTTGGACTCGTCACCAGAAGATGCACGCTACCGGCAGGCACAAATATTACCCTTGTAAAATATGTGGGAAGAAGTTTATATCTTTGGAGACGTTTCAAGCCCATTCCGCCAACCATACGTCTAGTAACCAACCGGAGCCCGTTCCGGCGGCGGCGGAAGCGGGCCCCGAGTTTCCGTGCAAGCGGTGTCCGTTTTCTTGCTTCTCGCAACAGGCCCTCAATTCGCACATGAGAATTCATGCGTCGTCGAAACCGGCGGGCGAGCTCGTCAACAACGGACAGGTTAAGGTCAATTCGACTAGAAAAAAGATGGTGTTGGTGAAGACGAGCAATGGCTACAAGTGCAGCGTCTGCCCTAAAGTTTTCCCGAACCATTACGCCGGTGCGAGTCATGTGAGGTCACATTTACAGGGACCAAAGAACTACATATGTCCGCTGTGTCCAAAGAAATATAAAGACTCTGAAATTCTATATAAACACATCTATTTGGATCACCCTGATAATCGGCACTAA
- Protein Sequence
- MFPKISLETFESTTSKIWCLQAIQISSISSACLIKEHAPVFNPVLEAGVSKEIPRACVLNCQSSRTCRQALACSIRVPLDGSGTAGSFSKPTPLARTATRSTSFFHCSVNSVYENSCPSSNLQDGVYCGSNTLLHILALFQMVKIELSIEVTLLEGLLLVSQLTTLQLKSLWACCLLQPTCLQSPTQPNLWSLSQIKKEPGLGSVVQHKTPSGVHITLQQTAPVAATIVRANPPPAHSNPPSARSNPSLAQSNPPSTNSNPSLARSNPPTRSNPFLARSSHPACSNPSPARSNPPSTRSNPPSTRSNPPPASSNSAVTPPIASPQPSSLKNVPLDIKPRKCKTCHFASTSREEMDQHLCSFQMSWQCNICQKYFYNKGNLLRHKGVCKSKSYKCTQCRLNFGSLEKMAQHRIIHTKVLAYVRDEDMSVCSCGKKFGCKMMMRIHKRYHHSYPRTESPAGASIRNGTDRFSGKKKKRDALKAAAEVDHVNDAEAKAPPQIDKEIQNRMGHFMPGAWNNRVCNLCGMGFDNERKFKNHKRMHYRLRRSMAKKERKNLEAEQTKGPEASEPAPPTMTKDSKTWFRKCNCKYCGEEFPNSSALIAHMRQKHALMKPTFKCEECHKVIMNRGGYITHIKSHKVCKVCLKLFSSLDHLAYGGVPKRSCHKCLRCNSLKFTTRPAWLAHCKMHAASKLGRLSSTIVNASRAAVVPCSFCNEMFPDPAALVSHLEIHVGNSSSSMGATMGEATAEPNKVNPLLIYSCTTCGNAFSSKDAWTRHQKMHATGRHKYYPCKICGKKFISLETFQAHSANHTSSNQPEPVPAAAEAGPEFPCKRCPFSCFSQQALNSHMRIHASSKPAGELVNNGQVKVNSTRKKMVLVKTSNGYKCSVCPKVFPNHYAGASHVRSHLQGPKNYICPLCPKKYKDSEILYKHIYLDHPDNRH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445105;
- 90% Identity
- -
- 80% Identity
- -