Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010005600.1:36746-45300[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.22 60 6.8 0.8 2 23 357 379 356 379 0.95

2 10 0.0018 0.49 13.3 1.6 1 23 385 407 385 407 0.98

3 10 3.9e-05 0.011 18.6 2.9 1 23 413 435 413 435 0.96

4 10 0.0025 0.69 12.9 4.3 1 20 441 460 441 463 0.92

5 10 3e-05 0.0081 18.9 1.4 1 23 472 494 472 494 0.98

6 10 6.7e-05 0.018 17.8 0.1 1 23 500 522 500 522 0.98

7 10 0.00033 0.09 15.7 1.4 1 23 528 550 528 550 0.93

8 10 3.6e-05 0.0097 18.7 0.8 1 23 556 578 556 578 0.98

9 10 0.0005 0.14 15.1 1.8 1 23 584 606 584 606 0.98

10 10 9.7e-06 0.0026 20.5 1.4 3 23 614 635 612 635 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.22	60	6.8	0.8	2	23	357	379	356	379	0.95
2	10	0.0018	0.49	13.3	1.6	1	23	385	407	385	407	0.98
3	10	3.9e-05	0.011	18.6	2.9	1	23	413	435	413	435	0.96
4	10	0.0025	0.69	12.9	4.3	1	20	441	460	441	463	0.92
5	10	3e-05	0.0081	18.9	1.4	1	23	472	494	472	494	0.98
6	10	6.7e-05	0.018	17.8	0.1	1	23	500	522	500	522	0.98
7	10	0.00033	0.09	15.7	1.4	1	23	528	550	528	550	0.93
8	10	3.6e-05	0.0097	18.7	0.8	1	23	556	578	556	578	0.98
9	10	0.0005	0.14	15.1	1.8	1	23	584	606	584	606	0.98
10	10	9.7e-06	0.0026	20.5	1.4	3	23	614	635	612	635	0.97

Sequence Information

Coding Sequence: ATGGGAAGTGTTAAACTATGCCGACTATGTGCCCTAGAAAGAGATAGTTTTGTGAAAATTTATGAAGAGGAAGGCCAGAAACTGAACTTGGCAACAAAGATCACCCAATGTCTACAAATCTGGCTATACCCAGAGGACCCCCTACCCAAGACAGTGTGTATTGACTGCTGCGCTAAACTCAACCAGTATTTTGACTTCTTTGAGTCTTCATCCCGAGCACAGCTGTCCTTGCAGCTAATGTTTGACCCGAAAGATAACAAGAATGAGATGAAAAAGGAACTGGACCAAGAGCCAACCGAGCAGGCTACCACGAGAATTGAAGGAGAGGACTCACCTAGTGGTGAGACAGGCAACACAGTCAGTGCTGAAGAGGATGACgacgacgatgatgatgatgacggtGATGACGCAGATCCACCAGAGTACCTCGAGTGTGTTCTGGCTGTCAAAGAGGCTCAGACAAGTCTAGTCGTACCAAGACAAGGTCTGGTCGTACCAAGACAAGGTCTAGTCGTACCAAGACAAGGTCTGGTCCCAAGACAAGGTCTAGTCGTACCAAGACAAGGTCTGGTCGTACCAAGACAAGGTCTAGTCGTACCAAGACAAGGTCTGGTCGTACCAAGACAAAGTCTAGTCGTACCAAGACCAGAGCTGAATTCCTCGGCATCCTCCCGGCGCAAGCGGCGTGTACCCATGAAGAGAGCGCCTCCAGCCCGTAAAGAGCGGGTGACTCGTCAGCGAGCCGACAAGAAGGACCGGAAGGAGTGTGAAGAAGAACCGGTGAATGTGGTGAAGGAGGAAGTAAAGGAGGAGCCACTGCCCGCTGCTAAGCCAGACTTTGAGGACACGTTCCTGTTTGGGGATGATGTTGGCGCAGGTATTGAGGACTCTAGCGAGGAGGAGGctgaggaggaggaggaagaagaGGAGGACCGGAGCTTTGACCCCAAGAAGAAGCAGGTGTCGGGGGCGACCAATGacaggaagaagaaaaggaagaAGGGCCTGGGCAAGATGTGTTCCTCCAAGCTGCCTCGCACCAAGTCTGTGTTGGAGGGCTACCCCTGGCAGTGCACCGACTGCACCAGCATATTGCCTACTCTCCAGGAGCTGCGAACACACCACCAGGTGAAACATAGCCAACTCCCCAACTTCAAGTGCGTCCAGTGTGCCAAGGTCTACACTCGTTATCGTAGCTTTGCCCGTCATGTCAAACTACATCGCAACCCCAAGAAGTTCAGATGTGAAGAATGTGGCAAATGTTTCTCCCAGAAGACAGTTCTCCAGTCTCACAGCACTGTACACACAGACGCGCGCCCTCACGTTTGTCCGCAATGTGGCAAAGCGTTCAAACAGTTCAGCTCTCTATATCTGCACAGCAAGTGTCATCTGCCAGACCAGACCAAGCCCAAGTTTCCGTGCGGAGTCTGTCAGAAGGAGTTCGCAACCAAGCACACACTGGAGACACATCGTAAGATCCACACGGGGGAAAGGAATTTCATCTGCGACGTGTGTGGGAAGAGCTTCATCGCCAAGGGAAGTCTCGACTACCACATATTGACACATTCTGGTGAAAAGCCTCACCACTGCCCCGTGTGTGGCAAGGGGTTCAAGACGGCGCGGCTTCTCGGCAAGCACGCAACCCTTCACACGGGCATCAAGCCACACCAATGCGATGTCTGCGGGAAACAGTTCCGAGAACGCGGTGCGCTCAGGGAACACAACCGCATACATACCGGGGCTATGCCCTACACGTGCGAGTTCTGTGGCAAGAACTTTCGTTTCAAAGGCATCCTGACAGTGCACCGGCGCCAGCACACCGGAGAGCGGCCTTACGGATGCACCGACTGTCGGCGCGAGTTCACCAACTGGGCCAACTACAACAAGCACATGAAGCGACGACATCGTAATGACAATGACCCTTCAGCGCCAACTCGTTCCGCCAATACTCGGACCTATCATCCCCCAGCGGCCAGCATCGTCGCCAACACAGCACCGGTGGTTTATAGTAACCTGACCGGTGGCGCAGGAGACAACTCCAATAGTTCTACGCTCACCCAGAATAGTGGCATGTACAGTCTACAGAACAACCACAGTAATCTGACATCAGCGGTGGCCAAAATGGCTGCCGCGAACCTCTACAACCAACACCTGGCTAGCAACAAGATGGCGGCAGTGTTCCAACATGGCGCCGGAGCCAACCACACTTCCAAGATGGCGAATGTGTTTCATCAGCAGGACAGCCAGGATTCGCTAGACCGTTCCAACCATTCCAGTACCGGTGGTAATGTTGCTAGCAATCCCCTGATGGGTTCGTACCATGTACCGTCATACGTCCCAGCGGGCCTGCCCATGGGCAGTATGGGCTACTACATTCCGCCCATTCACCACTCTGACCCTAGCATGGACATGTTACAGCACCGCATGGCTAACAACCAGTAG
Protein Sequence: MGSVKLCRLCALERDSFVKIYEEEGQKLNLATKITQCLQIWLYPEDPLPKTVCIDCCAKLNQYFDFFESSSRAQLSLQLMFDPKDNKNEMKKELDQEPTEQATTRIEGEDSPSGETGNTVSAEEDDDDDDDDDGDDADPPEYLECVLAVKEAQTSLVVPRQGLVVPRQGLVVPRQGLVPRQGLVVPRQGLVVPRQGLVVPRQGLVVPRQSLVVPRPELNSSASSRRKRRVPMKRAPPARKERVTRQRADKKDRKECEEEPVNVVKEEVKEEPLPAAKPDFEDTFLFGDDVGAGIEDSSEEEAEEEEEEEEDRSFDPKKKQVSGATNDRKKKRKKGLGKMCSSKLPRTKSVLEGYPWQCTDCTSILPTLQELRTHHQVKHSQLPNFKCVQCAKVYTRYRSFARHVKLHRNPKKFRCEECGKCFSQKTVLQSHSTVHTDARPHVCPQCGKAFKQFSSLYLHSKCHLPDQTKPKFPCGVCQKEFATKHTLETHRKIHTGERNFICDVCGKSFIAKGSLDYHILTHSGEKPHHCPVCGKGFKTARLLGKHATLHTGIKPHQCDVCGKQFRERGALREHNRIHTGAMPYTCEFCGKNFRFKGILTVHRRQHTGERPYGCTDCRREFTNWANYNKHMKRRHRNDNDPSAPTRSANTRTYHPPAASIVANTAPVVYSNLTGGAGDNSNSSTLTQNSGMYSLQNNHSNLTSAVAKMAAANLYNQHLASNKMAAVFQHGAGANHTSKMANVFHQQDSQDSLDRSNHSSTGGNVASNPLMGSYHVPSYVPAGLPMGSMGYYIPPIHHSDPSMDMLQHRMANNQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445091;
90% Identity: iTF_01448888;
80% Identity: -