Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010003302.1:65393-86123[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.093 25 7.9 0.2 2 23 227 249 226 249 0.94

2 9 0.065 18 8.4 1.2 5 23 259 277 255 277 0.92

3 9 3.4e-05 0.0093 18.8 4.8 1 23 283 305 283 305 0.97

4 9 4e-07 0.00011 24.8 0.4 1 23 311 333 311 333 0.98

5 9 7e-07 0.00019 24.1 0.8 1 23 342 364 342 364 0.98

6 9 1.5e-07 4.1e-05 26.2 0.2 1 23 370 392 370 392 0.99

7 9 7.3e-06 0.002 20.9 2.6 1 23 398 420 398 420 0.97

8 9 5.2e-05 0.014 18.2 3.2 1 23 426 448 426 448 0.98

9 9 0.047 13 8.9 0.7 1 13 454 466 454 469 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.093	25	7.9	0.2	2	23	227	249	226	249	0.94
2	9	0.065	18	8.4	1.2	5	23	259	277	255	277	0.92
3	9	3.4e-05	0.0093	18.8	4.8	1	23	283	305	283	305	0.97
4	9	4e-07	0.00011	24.8	0.4	1	23	311	333	311	333	0.98
5	9	7e-07	0.00019	24.1	0.8	1	23	342	364	342	364	0.98
6	9	1.5e-07	4.1e-05	26.2	0.2	1	23	370	392	370	392	0.99
7	9	7.3e-06	0.002	20.9	2.6	1	23	398	420	398	420	0.97
8	9	5.2e-05	0.014	18.2	3.2	1	23	426	448	426	448	0.98
9	9	0.047	13	8.9	0.7	1	13	454	466	454	469	0.90

Sequence Information

Coding Sequence: atggCCGAACTGAGTAATTTATGTCGTCTGTGCGCTGTTAAGGTTGACGATTATATAGGGATTTATGAGGAAGAGGGCCACAAATTAAGTCTAGAAGTTAAAATAacgaaatatttacaaatagagGTGAAACCCAGGGACTCGCTCCCCAAGGCGGTGTGTCTGGACTGCTGCACCAAGTTGGACCAGTGCTCTCATTTCCACGAGTCCAGCCTTCAGGCCCAGCTGACGCTACAGATGATCTTCCTGCCCAAATTGGACCACGTGGTCCAGCAACATTTGACGTCCATCGGTAAAGTCGAGGATGTGTTGCAGCAGACAACGCAACCAGTGGAGTTTAACCATTTCGACCATGACACCAGTTCGATGCTTGGGGAAGAGTTCCAGGAACCAAACCTGGACCCCACTCCACCAGTGTATGTAGAGTGTGTGCTCTCAGACAACCACAGTAATGCCAATTCCCTCAAAGATGGTGTGGGTCTGTCCAGCTTAGTAGCACCCTCCAAGCGCAAGTGCCGCACTCCGGTGAGGTGCGCCCAAGACACGCCGGACGCCAAGAAGGAACCGGCCGATCAGGAGCATGtcgaggaggaggaggaggaagaagaGGAATACTTAGAAGAGGAGGAGCCCCTATCCTCGAGGAAGCGTCGGGATGGCTGGGACAAGTTCCCTTGGAGGTGCACCGATTGTCCCCAGGAACTGCCGAGCATGCAAGCTTTGAGAAGCCACCACCAGGAGGCCCACAAACAGACGGTGCGCTTCCTCTGTATCCAGTGCAAGAAGGTTTACACCAAGTATTATGGCTTTGTCAGCCATGTTCGCAGACACAAGAACCACATGAAGTTCTGCTGTGAGGAATGTGGAAAGTGTTTCTCCAACAAGAAGGTGCTAGAGTCCCACCGCGCCACGCACTCGGACGCTCGACCATACGTCTGCAGTGAGTGCGGCAAAGCCTTCAGGCAGCAGAGTGCGCTGTACGTTCACAACCGCTCACATCAACCCGACGAGGTCAAGAACAAGTACCCTTGCGATCAGTGTGACAAGAAGTTCTCGACGAAGCCCAACCTGGTGACTCACAAGAGGATCCACACGGGGATACGGAACTACACGTGCGACCAGTGCGGCAAGTCCTTCATCCAGAAGGGGAACCTGGACGCTCACCTCCTCACACACTCGTCGGACAAACCTCACACCTGTACCATATGCAACAAGGGGTTCAAGACCCCCCTGCAACTGCGGAAACACCAAACCGTGCACACGGGCGCCAAACCGCATCAGTGCGACGTGTGTGGACGGCAGTTCAGGGAGCGAGGGACCCTCAGGGAGCACCATCGCATCCATACCGGGGCCATGCCCTTCACTTGCGAGTTTTGCGGCAAGGCGTTCCGCTTCAAGGGCATCCTTACGGTCAGTGGTTCTTACCTTGACGGTGAAATGCAGACtgtaaaaacaactttgaaaGCTGCCCCTGATGCAATCCTCAAGCTGATTTCCCACACATACAAAGGAAACTGCTCGACTCAACGGTGCGTTGGCGTCCTAAGCGCTGTGCGGGGTTCTGCTCTCCGCAAAAACTGTGAAGGAGTGATCTGCAGCAACTCTGATATTGATGATCTTCGACAGTTCCGCATCCAAGACGAAATGAACTCAGAAATTGACTCTGATGCTGATAATATTTATGAGCAAGATGAAGATGaaaattga
Protein Sequence: MAELSNLCRLCAVKVDDYIGIYEEEGHKLSLEVKITKYLQIEVKPRDSLPKAVCLDCCTKLDQCSHFHESSLQAQLTLQMIFLPKLDHVVQQHLTSIGKVEDVLQQTTQPVEFNHFDHDTSSMLGEEFQEPNLDPTPPVYVECVLSDNHSNANSLKDGVGLSSLVAPSKRKCRTPVRCAQDTPDAKKEPADQEHVEEEEEEEEEYLEEEEPLSSRKRRDGWDKFPWRCTDCPQELPSMQALRSHHQEAHKQTVRFLCIQCKKVYTKYYGFVSHVRRHKNHMKFCCEECGKCFSNKKVLESHRATHSDARPYVCSECGKAFRQQSALYVHNRSHQPDEVKNKYPCDQCDKKFSTKPNLVTHKRIHTGIRNYTCDQCGKSFIQKGNLDAHLLTHSSDKPHTCTICNKGFKTPLQLRKHQTVHTGAKPHQCDVCGRQFRERGTLREHHRIHTGAMPFTCEFCGKAFRFKGILTVSGSYLDGEMQTVKTTLKAAPDAILKLISHTYKGNCSTQRCVGVLSAVRGSALRKNCEGVICSNSDIDDLRQFRIQDEMNSEIDSDADNIYEQDEDEN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -