Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010000104.1:125493-142545[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1 2.8e+02 4.7 0.3 1 23 325 348 325 348 0.92

2 18 8.9 2.4e+03 1.7 2.9 1 21 353 376 353 378 0.92

3 18 0.012 3.4 10.7 0.2 2 20 597 615 596 617 0.93

4 18 0.23 62 6.7 3.1 1 23 623 645 623 645 0.95

5 18 4.8e-05 0.013 18.3 6.8 1 23 651 673 651 673 0.98

6 18 2.4e-05 0.0066 19.2 1.0 1 23 679 701 679 701 0.97

7 18 0.00052 0.14 15.0 1.3 1 23 706 728 706 728 0.95

8 18 0.95 2.6e+02 4.8 0.3 2 23 738 759 737 759 0.96

9 18 0.0032 0.86 12.6 0.7 1 23 765 789 765 789 0.95

10 18 6.6e-08 1.8e-05 27.3 3.3 1 23 795 817 795 817 0.98

11 18 0.06 16 8.5 0.4 1 23 823 845 823 845 0.97

12 18 1.3e-05 0.0036 20.0 0.4 1 23 858 880 858 880 0.98

13 18 0.0012 0.31 13.9 2.7 1 23 886 908 886 908 0.98

14 18 0.0023 0.64 13.0 0.1 1 23 914 936 914 936 0.98

15 18 1.3e-05 0.0036 20.0 0.3 1 23 942 964 942 964 0.96

16 18 2.9e-07 7.9e-05 25.3 0.3 1 23 970 992 970 992 0.99

17 18 9.9e-05 0.027 17.3 2.6 1 23 998 1020 998 1020 0.98

18 18 0.1 28 7.8 1.9 1 23 1037 1060 1037 1060 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1	2.8e+02	4.7	0.3	1	23	325	348	325	348	0.92
2	18	8.9	2.4e+03	1.7	2.9	1	21	353	376	353	378	0.92
3	18	0.012	3.4	10.7	0.2	2	20	597	615	596	617	0.93
4	18	0.23	62	6.7	3.1	1	23	623	645	623	645	0.95
5	18	4.8e-05	0.013	18.3	6.8	1	23	651	673	651	673	0.98
6	18	2.4e-05	0.0066	19.2	1.0	1	23	679	701	679	701	0.97
7	18	0.00052	0.14	15.0	1.3	1	23	706	728	706	728	0.95
8	18	0.95	2.6e+02	4.8	0.3	2	23	738	759	737	759	0.96
9	18	0.0032	0.86	12.6	0.7	1	23	765	789	765	789	0.95
10	18	6.6e-08	1.8e-05	27.3	3.3	1	23	795	817	795	817	0.98
11	18	0.06	16	8.5	0.4	1	23	823	845	823	845	0.97
12	18	1.3e-05	0.0036	20.0	0.4	1	23	858	880	858	880	0.98
13	18	0.0012	0.31	13.9	2.7	1	23	886	908	886	908	0.98
14	18	0.0023	0.64	13.0	0.1	1	23	914	936	914	936	0.98
15	18	1.3e-05	0.0036	20.0	0.3	1	23	942	964	942	964	0.96
16	18	2.9e-07	7.9e-05	25.3	0.3	1	23	970	992	970	992	0.99
17	18	9.9e-05	0.027	17.3	2.6	1	23	998	1020	998	1020	0.98
18	18	0.1	28	7.8	1.9	1	23	1037	1060	1037	1060	0.90

Sequence Information

Coding Sequence: ATGTTGGAGCAGAGTTGGTTGGTCGGGATAGTAGAAAATGGGCCCGCGGGTGGTGGTTGGTTGCCGATGTCCTCTTCAGGGTCTTCTGTCGGTAGGCTATACCAAAGCTGCAGATGTAAACCATCTCATGCGGTCATCGGTAAAGAGGACAACCAGACAATGGCAGTGACGTTAGATTTGAATAAGTTGGGTGTAGTCGCTGGTCAACTCTGCCGAGTGTGTGCAAGATTGAGTCAGAGACTAACACCAATATTTGGTCAAAAGGGTATAGAAATAGATTTGGCAACCAAGATCCACACACATCTTCCCATTATGGTGACTGAAGATGATTTGATGCCTGTGTGCTTGTGTGAACCCTGCATACATAAGCTACAAGTGTGCCATAACCTTGTCAATACATGTCTAGAAGGTGATATAAGACTCAGAAAAATAATGGGATTGCCTATAGAACAGGAAGTAATTCCTGAACCAGATTGTGAATTAATAGATTTGGAGAAAGAAGAACCTTCCGAGAAAGCTGCACCTTCTGAGAAAGCTGCAACCCTGGAAGATAAAAACCAAGAGACTGAACACAAGCAAGAAGAAAGTGATGATGATTTTGTTTGGGAAGAGAACCAGTCTGCCGTTGATGTCATCCCTCCTTCCCCTCCACCTGATGAAATCAGGCCTCAAAGAGTTGCCAAGAGGGGAAGACCAAGGAAGTTTCCGGTCCGTCAAGAAATCAAACAAGTTTGTAATCCTCCACTTGTATTCTATGAGTCTAAACATGCCTTTGATTTGCACATGTTAAACCATTTGGAAGCAGAGGAAGGAGAAATTCGTATCGGTATGAGTGAGGATGCAAACATTGGTGAGCTAGCTAATGAGCATATTGATCAATCAAATACATCCTCAAAAAAACATCAAGCCTCAGAGTCTCAAAACAGGTTTACTAGAACTGACTTAGAGCCTGCTCCCAAGGATGTATTTTCTTACCTGTGTTCATATTGTAAAGAGACACTGATAGGTACCGATATGTTTCTAGCTCATCAATCCCAGATGCATCCAGATAAAGTGTTTACGTGCACTATATGTAAGCCCCATGTTGTGTTCTATGAGACTAAAGAGCTGTTTGAGCGACACATGCTTTGTCATCCACAAGAAATCATAGAAAGGGATGATTCATTGGAGGAAAGTGTAATCACAGCCTTAGATAAACCAGCAACTGAGGATTATGCTGAGACCTTGCCTGCAGGAACTACTGATGGAAATGTATCTGTTTCTACTCCTGATGATGCATCTGTTCTTATCACTGCTTCAAATGAAGTTACTGGCACTTCTGCCTGTCCCATTGATGTCTCTACTCTCATTAAAGATGATTCTGAAAATAACTTCTCTTTTGTTGATGCGACCATTCCTTATCAAGAGAATCCTGTTGATACTTTCACTTTTTCTGATGCGGAAATTCCTGCCATTAACTCTGATGTCACTGATGTCACTACTAGTGATCCAAGCCATAAGCAGCCTGATAACTTGGAAATTACCACTATATTCAATGTTCAAGTTGAAACACCAAACATTTTACCAGGAATCTCAGAAAACCAAATTAATGCCAATCTCCGTATGAAACTTTCTAAAGAATTTCAAGGTGTAAGCAAAAGTCTTCAGTCTAGAATAATAGAAACTATTCAAAAGATAGCCTCAACaaagaaatcaaatcaatcaagaCTGTCTTTGAAAAGACCATATAATCTCAAAGTCAAAAAGACTATAATGAAAAGGAAGAGACTTCGCTCCAAGTTTGGTTGGTATTGCCGACAATGTGACCttaaatttgattcaagtgAAGAATTGGAAAAACACAAGAGTGCAAACACTTGCTCCACACACCCTTGTCAATACTGTGGAAAATTGTTTCACTCGAAGAAAATATTGCTGGAACATGAGCGCCTACACACCAATGAGCGACCCTACATGTGTGAGTATTGTGGGAAGAGTTTTCGCACATGCACAATGTTGCGCACCCATCATAATTCTCACAGCACAAACCAAACCTTTGTGTGTCCGGATTGTGGCAAGAGCTATAACAACAAAGCAAGCTTTCACTATCATGCTGCCACCCACAACAGCCAGGAGTTCCTTTGTGACATCTGTGGGAAGAAGCTAAAGCACGCTGGAAGTCTCCGCATCCACAAGCTTAAGCACAGCAACCCAGATGCCTTCAAGCGTGTTTCATGTGACGTATGTGGCAACTTATATGAGAGCAGgtACCGAATGATGGAACATCGGCGTTTGCACACTAACGAACGTCCATACAAATGCGCAGAGCCagattgtttcaaaatgttccGTAAGCTGGAGCAACTTCGACAGCACTCAACTGTTCACACAAACCTACGCAAGTTTAAGTGTGATGTGTGTGATAAGTCCTTTAAGCGGCGCAGCAATTTGAAGACCCACCGCAAGATCCACTGCCAGGACTACCGCTATAAGTGCAGTGTGTGCTTGCTACCATACAACAGTCTACGTGAGCTGCTGTCTCATCGCTCTTTACATACCCAAGAGGAACTTAAGCGAGCCAACAAAGAACCATTTGAATGCCCTGAGTGCAAAAAGATCCTGTCGACTAAAGTGTCTTTGCAACAGCATCTGTTAACTCATACCAACTTGGCGCCgtttagttgtaatttttgCCAGCGGTCGTTTAGGAGCAAAGTGTCACGTGATGTCCACCTGCGCACACATACAGGAGAAAAGCCTTATGCTTGCAAATATTGCGAGGCAAATTTCTCACTGAATGCCAGCCTTGTGGTTCATGAGCGCATTCACACTGGAGAAAAACCCTTCCCTTGCAATATGTGTGACAAAGCTTTCCGTTCAAAGATCAACCTCATGCAACATTCTATTGTACACTCAGAACTTCGCCCATATGTTTGCAGTGTTTGTAATCGGGCATTTCGCAGGCGAGATGGCCTTGAAACACACATGCGTGTTCATACTAACGAGCGACCGTATGCTTGTAAATGGTGTGATCGTGCATTCAAGCAAAAGGGTGACTGCAACAAACAtatgaacacacattttaaaactactacGGTGCCAGTGGCTGAAGATACATCATCATCTGCATATACTTGCCCATTTtgtaagaagaaaataaaatcttctgctcatataaaaatgcatttttctGCCGTTCATGGAATAACTTCGTTGAGTTCAAGCTCGCCTCCAGATAGTGACACAATGGTTATGATTAATACTGATGATTTTTCCAGTGTTTCTGAAGTAGAAATTACAATGGATCCAACTTATTATGTTAAACaggaataa
Protein Sequence: MLEQSWLVGIVENGPAGGGWLPMSSSGSSVGRLYQSCRCKPSHAVIGKEDNQTMAVTLDLNKLGVVAGQLCRVCARLSQRLTPIFGQKGIEIDLATKIHTHLPIMVTEDDLMPVCLCEPCIHKLQVCHNLVNTCLEGDIRLRKIMGLPIEQEVIPEPDCELIDLEKEEPSEKAAPSEKAATLEDKNQETEHKQEESDDDFVWEENQSAVDVIPPSPPPDEIRPQRVAKRGRPRKFPVRQEIKQVCNPPLVFYESKHAFDLHMLNHLEAEEGEIRIGMSEDANIGELANEHIDQSNTSSKKHQASESQNRFTRTDLEPAPKDVFSYLCSYCKETLIGTDMFLAHQSQMHPDKVFTCTICKPHVVFYETKELFERHMLCHPQEIIERDDSLEESVITALDKPATEDYAETLPAGTTDGNVSVSTPDDASVLITASNEVTGTSACPIDVSTLIKDDSENNFSFVDATIPYQENPVDTFTFSDAEIPAINSDVTDVTTSDPSHKQPDNLEITTIFNVQVETPNILPGISENQINANLRMKLSKEFQGVSKSLQSRIIETIQKIASTKKSNQSRLSLKRPYNLKVKKTIMKRKRLRSKFGWYCRQCDLKFDSSEELEKHKSANTCSTHPCQYCGKLFHSKKILLEHERLHTNERPYMCEYCGKSFRTCTMLRTHHNSHSTNQTFVCPDCGKSYNNKASFHYHAATHNSQEFLCDICGKKLKHAGSLRIHKLKHSNPDAFKRVSCDVCGNLYESRYRMMEHRRLHTNERPYKCAEPDCFKMFRKLEQLRQHSTVHTNLRKFKCDVCDKSFKRRSNLKTHRKIHCQDYRYKCSVCLLPYNSLRELLSHRSLHTQEELKRANKEPFECPECKKILSTKVSLQQHLLTHTNLAPFSCNFCQRSFRSKVSRDVHLRTHTGEKPYACKYCEANFSLNASLVVHERIHTGEKPFPCNMCDKAFRSKINLMQHSIVHSELRPYVCSVCNRAFRRRDGLETHMRVHTNERPYACKWCDRAFKQKGDCNKHMNTHFKTTTVPVAEDTSSSAYTCPFCKKKIKSSAHIKMHFSAVHGITSLSSSSPPDSDTMVMINTDDFSSVSEVEITMDPTYYVKQE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447806;
90% Identity: -
80% Identity: -