Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010000162.1:114667-115680[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.7e-06 0.00072 22.2 2.4 1 23 57 79 57 79 0.97

2 10 4.4e-05 0.012 18.4 2.5 1 23 85 107 85 107 0.97

3 10 4e-05 0.011 18.6 1.7 1 23 113 135 113 135 0.97

4 10 8.6e-07 0.00023 23.8 1.0 1 23 141 163 141 163 0.98

5 10 1.2e-06 0.00034 23.3 0.7 1 23 169 191 169 191 0.98

6 10 0.00029 0.078 15.9 4.4 1 23 201 223 201 223 0.98

7 10 0.00011 0.031 17.1 0.2 2 23 230 251 229 251 0.96

8 10 4.7e-07 0.00013 24.6 0.3 1 23 257 279 257 279 0.97

9 10 1.1e-06 0.00031 23.4 1.3 1 23 285 307 285 307 0.97

10 10 9.6e-06 0.0026 20.5 1.4 1 23 313 335 313 335 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.7e-06	0.00072	22.2	2.4	1	23	57	79	57	79	0.97
2	10	4.4e-05	0.012	18.4	2.5	1	23	85	107	85	107	0.97
3	10	4e-05	0.011	18.6	1.7	1	23	113	135	113	135	0.97
4	10	8.6e-07	0.00023	23.8	1.0	1	23	141	163	141	163	0.98
5	10	1.2e-06	0.00034	23.3	0.7	1	23	169	191	169	191	0.98
6	10	0.00029	0.078	15.9	4.4	1	23	201	223	201	223	0.98
7	10	0.00011	0.031	17.1	0.2	2	23	230	251	229	251	0.96
8	10	4.7e-07	0.00013	24.6	0.3	1	23	257	279	257	279	0.97
9	10	1.1e-06	0.00031	23.4	1.3	1	23	285	307	285	307	0.97
10	10	9.6e-06	0.0026	20.5	1.4	1	23	313	335	313	335	0.99

Sequence Information

Coding Sequence: ATGCAAGACAAGATAAAGAGTGTTGTCAGAAACTCTAGTCGATACACCACGAAGGATGATACCACGGACACACAGAAATACCATTCGCCATCGGATGCTGTTAAAGCTATATCTAATCGAATTGGATTATCGGTAAGCCTGAGGAGTGGTACAGACGATCTGCCCAATTATAACTGCGGAATATGTGGGAAAGTATGTGTGTCCAAGGGCCACCTTAAAAGACATCAGGTGTCACACACAGACGATAGACCGTACCACTGCGACATCTGTGACCGCAACTACAAACGGGCCTTCGAGTTACGCAAACACAAAGAGATCCACACGGGAGAAATGGAGCACGTCTGCGACATTTGCGGCTACGCCACCTTCCGCAAGTCGAATCTTCTTGTGCACAAGAAGAGACACTTAAACGATTACAAGTTCAAATGCGACACTTGCGGCAAAGGGTATTATTCCAACACGGAGCTCCAGCGGCACATGACTATACATACGGGTGAACGTCCCTTCCAATGCGACGTGTGCGGCCGGGCGTACCCGTACAAGAGTAACTTAGCGACCCACAAGAAAAAACACAACCcgaattataaaaacaacttaaagtATCAGTGCGAGTTTTGTGGCAAAACGTTTCTCCACAACAATTCGCTGCGTATCCACAGGAAGTATCATCTCGGGGAAAACCAGTTGATGTGCGATGTTTGCGGGAAAACCCTCTCTGGTGTAGACTCACTCAGGACTCATCGGCGGATACACACTGGAGAGAAGCCATTTGCGTGTGACCTTTGCGGTAAGGAGTTCAGTAAACCCGACTATCTGAAGGTTCATCGGCGAATCCACACCGGAGAGAAGCCTCACCCTTGCGGCGAATGTGGCAAATCATTCACTCAACTCTCCACGCTCTCTGTTCACAAGAGGAACCACTCGGGACTCAAACCGTACCAGTGTCAGATGTGCGCCAAGGCGTTTGTATCAAGGACCCTCTTAAATACACATCAGAAGAAACACAGCACTTAG
Protein Sequence: MQDKIKSVVRNSSRYTTKDDTTDTQKYHSPSDAVKAISNRIGLSVSLRSGTDDLPNYNCGICGKVCVSKGHLKRHQVSHTDDRPYHCDICDRNYKRAFELRKHKEIHTGEMEHVCDICGYATFRKSNLLVHKKRHLNDYKFKCDTCGKGYYSNTELQRHMTIHTGERPFQCDVCGRAYPYKSNLATHKKKHNPNYKNNLKYQCEFCGKTFLHNNSLRIHRKYHLGENQLMCDVCGKTLSGVDSLRTHRRIHTGEKPFACDLCGKEFSKPDYLKVHRRIHTGEKPHPCGECGKSFTQLSTLSVHKRNHSGLKPYQCQMCAKAFVSRTLLNTHQKKHST*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446845;
90% Identity: iTF_01445857;
80% Identity: -