Tshe038958.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- ZNF131
- Assembly
- GCA_902151425.1
- Location
- CABFVX010004628.1:34061-35335[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.9 1.1e+03 2.9 0.6 12 23 2 13 1 13 0.90 2 14 0.00042 0.12 15.3 1.1 2 23 19 40 18 40 0.96 3 14 1.4e-05 0.0037 20.0 2.0 3 23 48 69 47 69 0.95 4 14 0.00017 0.045 16.6 6.0 1 23 75 97 75 97 0.98 5 14 8.2e-05 0.022 17.6 2.2 1 23 107 130 107 130 0.94 6 14 0.16 44 7.2 4.9 1 23 137 159 137 159 0.94 7 14 0.0079 2.1 11.3 0.4 1 20 165 184 165 185 0.96 8 14 2e-05 0.0055 19.5 1.8 1 23 193 216 193 216 0.93 9 14 5.6e-07 0.00015 24.4 2.2 1 23 232 254 232 254 0.98 10 14 0.011 3 10.8 0.5 1 23 260 283 260 283 0.91 11 14 2.9e-05 0.0078 19.0 0.6 1 23 303 325 303 325 0.98 12 14 4.8e-05 0.013 18.3 0.4 1 23 331 353 331 353 0.99 13 14 1.5e-07 4e-05 26.2 3.2 1 23 359 381 359 381 0.98 14 14 1.7e-06 0.00047 22.8 0.2 1 23 387 410 387 410 0.96
Sequence Information
- Coding Sequence
- ATGACCAGGAAGTCATTGAAGGAACACATCAAGAAACATTCCCAAGAACCTGTCAAGTGTGACTTGTGTGGTCGGATGTATAAGAACGAGCATGTCTTGAAAACCCATATCAGCTTGCACACAGGGGCCCAGCCacgaccatgcagccactgtgACAAGGCCTTCTTCTTTGCTTCATCCTTGAAGCAACATATGAAGCAGGAACATGGAGAGTTCCTTTTATtcaagtgtgatgtttgtggaaAAACATTCAACTTAAAATGTCACCTTAAGTCCCATAACGAGACTCACAATCATGATAAGATTGCACCCATTCTCCACATATGCCAAATGTGTGGCAAGACATTCAAAAAGCTGCAGAGCCTAAAGATACATGAGAAGCAGATACATCTAGGTGTGCCCAAACAGCACATATGTGAATGTTGTGGTGCAATGTTCCATAACATCAGCAAGCTCAAGCTGCACATGCTGAGACACACAGGTGACCGCCCCTTCACCTGTGAGGCATGTGGTCTTCGTTTTGGCACCAAGCATCGCCTCAACAACCACCTAGTGTGCCACTCTGAAGAACGGCCTCATACCTGTGGTGTTTGTGGTAAGACCTTCAAGAGGCAGCGCAATTTAGGCATGCATGAGCAGAACTCACATGGAATCTTTTCTCAAGGCATGGGAAAGGAGAAGGTTGTGATCAACTTTCCATGCCAGGTGTGCGATAAACAGTTTACCACAAAGCATAAGCTTGCTGCACATATGAGAAACCACACTGGGGAACGACCCTTTACCTGTGAGACTTGCGGCCGCGAGTATAAAACCGCTGCAGGTCTAGGTTTCCACACAAAGACATCACACATGGTTTGGGAGGGCAAGCCAATGTCAAAGTACATTCAGGATGCAATAAAGAAAGACTTCCCTTGCAAGATTTGTGGGAAGGTGCTCTCCTCCAGGGTAGGGCGGGAACATCACATCCGCACCCATACCGGCGAGCGTCCATACAAATGCAAACTGTGTGAGCTGGCGCTCAAGACACCTGCCCAATTGCACGCTCACATGCAAATCCACTCTGACAGCAAGCCCTTCCCATGCACATACTGTGACAAGACTTTCCGCCGAAGGCCACACCTTGTAAGCCATCTTCGCACACATACAGGAGAAAAGCCCTATCCTTGTGAGGTTTGTGGGCGGGCTTTTTCACAGAAGGGGGACATGAAAAAACACCGTGAGAAGATCCACAACATTCCAGGAATGGTGGAGAAAATATCGCTTGTTTCATTGTGA
- Protein Sequence
- MTRKSLKEHIKKHSQEPVKCDLCGRMYKNEHVLKTHISLHTGAQPRPCSHCDKAFFFASSLKQHMKQEHGEFLLFKCDVCGKTFNLKCHLKSHNETHNHDKIAPILHICQMCGKTFKKLQSLKIHEKQIHLGVPKQHICECCGAMFHNISKLKLHMLRHTGDRPFTCEACGLRFGTKHRLNNHLVCHSEERPHTCGVCGKTFKRQRNLGMHEQNSHGIFSQGMGKEKVVINFPCQVCDKQFTTKHKLAAHMRNHTGERPFTCETCGREYKTAAGLGFHTKTSHMVWEGKPMSKYIQDAIKKDFPCKICGKVLSSRVGREHHIRTHTGERPYKCKLCELALKTPAQLHAHMQIHSDSKPFPCTYCDKTFRRRPHLVSHLRTHTGEKPYPCEVCGRAFSQKGDMKKHREKIHNIPGMVEKISLVSL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446835;
- 90% Identity
- iTF_01446835;
- 80% Identity
- -