Tshe025016.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010002137.1:1-10921[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.4 1.1e+02 5.9 1.1 2 13 289 300 288 308 0.82 2 16 0.098 27 7.9 3.9 1 20 316 335 316 338 0.90 3 16 0.53 1.4e+02 5.6 0.9 2 14 354 366 353 373 0.84 4 16 0.0071 1.9 11.5 4.2 1 23 380 402 380 402 0.96 5 16 2e-06 0.00054 22.6 0.3 3 23 410 431 408 431 0.95 6 16 0.00085 0.23 14.4 4.8 1 23 437 459 437 459 0.97 7 16 0.00013 0.035 16.9 0.6 1 23 465 487 465 487 0.98 8 16 2.8e-07 7.5e-05 25.3 2.5 1 23 493 515 493 515 0.99 9 16 1.3 3.6e+02 4.3 1.9 1 23 526 550 526 550 0.93 10 16 2.3e-07 6.3e-05 25.6 1.2 1 23 568 590 568 590 0.99 11 16 3.1e-05 0.0085 18.9 2.8 2 23 597 618 596 618 0.96 12 16 1.3e-05 0.0035 20.1 3.9 3 23 626 646 624 646 0.98 13 16 0.44 1.2e+02 5.8 0.5 1 23 652 674 652 674 0.93 14 16 0.001 0.27 14.1 2.8 1 20 680 699 680 702 0.94 15 16 4.1e-08 1.1e-05 27.9 0.3 1 23 708 730 708 730 0.98 16 16 5.6e-05 0.015 18.1 3.9 1 23 736 758 736 758 0.98
Sequence Information
- Coding Sequence
- NACTCGTGTAATATTCTGATAAAAAAAGAGAGTAGAGGGGATAACGAATGTTCAGACTCCAATGTGGTGGAGGATGAAGACGAGTACTATGTCTCAGAGCAAGAGTATGAATCAGGAGACACAGAGAGTGGGGATGAAGGAGAGGGGGAACATCCGGGTCAGCTGTGTCGGCTCTGCGCCAAGAATGCTGCAGAGATGTTATACATCTACAGTACTAGTGGCAAGGATCAACTCATAGCTGAGAAGATCAACACTACCTTACCCGTCTCGgtAAGGTTGTCTGACCATCTCCCCAAGCAGCTCTGTACAGATTGTGTCAATAAACTTAACACATGTCATGAGTTTGCAGAGTCTTGTTTATTGGCCGAAGAGAAACTAACCCATTTAAATAGAAGAAGATTGTTTAGATCTGTTTCTGCAACAATTAATGTATCCATGTCAAGAGAGACCGAATGTAAAAATACAGACAGCATACTATCTAACGAGAATAAAAGTGATAgccaaatttttgaaaacaataattactgCTGTCCTCTTTGCTGTAAGGGAAACATGACAGTTCAAAACACAGAAACAGGCGATAAAGATGTAAGAATAGACATATTACGGACACTAGAAGACAACTCTTTACCTGCAAATATGGTTGATGGTGCGACTCATATTACTAAGCTATTTATTGACAGCAATGACTCATCCCAATTgaatggtgatgatgatgataatagcTCTAATGCATGGGAAATCAAGGATAGTGTTGAAGGGACAGAAATATCAAATGCTGGCAACAATAGTGGTTTGTTCAATCTTCCAATAGAGGGTAACATTTTGATTTATGGAGAAGCTGTGTCAGTGCAAAATGCTTGTATGTGTAGGATATGTGGTGAATCTTTTAAGAATGTAGATTTATGTCTAGCTCATTCCATGTGTCATGCCACAGCAGATTTCTTTCCTTGCAGTATGTGTGATTTGTGTTTTGTGAGTGATTCAAGTTTTAACAGTCATTGCATGGAACACACAGTAAAAGCGAAGCTGTCCGGATTCAGAGTGTCAAAACGGCTGCAGTGCGAGATGTGCAACCGAAGGTTCAACAATGAAAGGACTCACGCAAACCATGCTTGTGAGACAGGAACTCGTCCATATAAGTGTGACCAGTGTGGAAAGTTTTTTAGTTCAGAAGCACGCCTTACTTTCCATCGCCATACACACAATGGAGCAAATCCCATGATATGTGAGTATTGTGGTAAAACATTCTCCCGTGAAAACAATCTCTTTGATCACGTCAGACTTGTGCACATGGGTGAGAAGGTTCATAACTGTCATTATTGCGGAAAGACTTTTCAGATCAAGACGCGTCTCATTTCACACTTGCGTGTACATACTGGCGAGCGCCCATTTCAATGTAGCTACTGTGATGGAAAGTTTTATGACAACGCAACTTTGAAAGGGCATATGGTGACACACATGAACATAAAACCATTCCAGTGTGATATTTGTGGGCGTTGTTTTGCTAGAAAAACTTTGTTGAAAAATCATTTGTTGACTCATATATTTATGAAAGATTCCCAAAAACGAATTCACAAGTGTAAAATATGTGAGGATTCTACCTTCCCGACGCATGCAAAGTTGGCAGAACATAGAAAGGAAGTGCATCCGGAGTTAAGATTTGCAAATAATGACTTTGCTGAAAAGACTTCTAAACCTTTCAAGTGTGAAGAGTGTGGAAAGAGTTTTGCCTATCGTGTCACTCTGACATCTCACCAGCGGAGCCACACGGGGGAAATGCCGTGGCATTGTGAGTTTTGTGGAAAGAAGTTTTCCCAGAAACGTTCTCTAGTGCTTCATCGTCGAATACACACAGGCGAGAAACCATTTGGTTGTCATTACTGCGGGAAGCGGTTCATCCAGAGTGCACACCTTTACTCCCATCAGCGTCTACACACGGGCGAGAAGCCCTACTCTTGTCAGATGTGTGGGGACAGCTTCCGCCTGAAGGATGTACGTGATGCACATGAGCGCAAGCACACAGGTGAACGCCCATTTAAGTGTAATGTATGCGAGAAAACTTTCCGAACATCGCATGCATATTACCAACACACATGGATTCACCAAGGAAAGAAGCCATACCCTTGCAACTACTGTGGGAAAGCCTTCCGCCGCTCCAACGGGCTCAAGATCCATATCCGCATCCATACAGGGGAGAAGCCTTACCGCTGTGACTTGTGTGGACGTTGTTTTGCTCAGAAACAAGAcatgaaaaaacataaaaacttgcACCTACAGGGAAAGCTTTAA
- Protein Sequence
- XSCNILIKKESRGDNECSDSNVVEDEDEYYVSEQEYESGDTESGDEGEGEHPGQLCRLCAKNAAEMLYIYSTSGKDQLIAEKINTTLPVSVRLSDHLPKQLCTDCVNKLNTCHEFAESCLLAEEKLTHLNRRRLFRSVSATINVSMSRETECKNTDSILSNENKSDSQIFENNNYCCPLCCKGNMTVQNTETGDKDVRIDILRTLEDNSLPANMVDGATHITKLFIDSNDSSQLNGDDDDNSSNAWEIKDSVEGTEISNAGNNSGLFNLPIEGNILIYGEAVSVQNACMCRICGESFKNVDLCLAHSMCHATADFFPCSMCDLCFVSDSSFNSHCMEHTVKAKLSGFRVSKRLQCEMCNRRFNNERTHANHACETGTRPYKCDQCGKFFSSEARLTFHRHTHNGANPMICEYCGKTFSRENNLFDHVRLVHMGEKVHNCHYCGKTFQIKTRLISHLRVHTGERPFQCSYCDGKFYDNATLKGHMVTHMNIKPFQCDICGRCFARKTLLKNHLLTHIFMKDSQKRIHKCKICEDSTFPTHAKLAEHRKEVHPELRFANNDFAEKTSKPFKCEECGKSFAYRVTLTSHQRSHTGEMPWHCEFCGKKFSQKRSLVLHRRIHTGEKPFGCHYCGKRFIQSAHLYSHQRLHTGEKPYSCQMCGDSFRLKDVRDAHERKHTGERPFKCNVCEKTFRTSHAYYQHTWIHQGKKPYPCNYCGKAFRRSNGLKIHIRIHTGEKPYRCDLCGRCFAQKQDMKKHKNLHLQGKL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447630;
- 90% Identity
- iTF_01445093;
- 80% Identity
- -