Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010001275.1:110717-146321[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00061 0.17 14.8 3.1 2 23 569 591 568 591 0.96

2 16 0.0062 1.7 11.6 4.8 1 23 596 618 596 618 0.98

3 16 0.0013 0.35 13.8 4.7 1 23 633 656 633 656 0.91

4 16 8.7e-05 0.024 17.5 2.0 1 23 662 684 662 684 0.99

5 16 1.5e-05 0.0041 19.9 4.1 1 23 690 712 690 712 0.95

6 16 1.3e-05 0.0037 20.0 1.2 2 23 722 743 721 743 0.97

7 16 7e-05 0.019 17.8 0.4 1 23 749 771 749 771 0.93

8 16 3.7e-06 0.001 21.8 0.7 1 23 777 799 777 799 0.99

9 16 0.19 51 7.0 0.1 1 23 805 827 805 827 0.98

10 16 4.7e-06 0.0013 21.5 0.8 1 23 849 871 849 871 0.99

11 16 9.1e-05 0.025 17.4 0.5 3 23 879 900 877 900 0.96

12 16 2 5.5e+02 3.7 1.7 1 23 906 928 906 928 0.86

13 16 0.00049 0.13 15.1 3.4 1 23 934 956 934 956 0.99

14 16 6.6e-07 0.00018 24.1 0.7 1 23 962 984 962 984 0.99

15 16 4.3e-06 0.0012 21.6 1.7 1 23 990 1012 990 1012 0.98

16 16 1.6 4.3e+02 4.1 0.0 2 23 1021 1043 1020 1043 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00061	0.17	14.8	3.1	2	23	569	591	568	591	0.96
2	16	0.0062	1.7	11.6	4.8	1	23	596	618	596	618	0.98
3	16	0.0013	0.35	13.8	4.7	1	23	633	656	633	656	0.91
4	16	8.7e-05	0.024	17.5	2.0	1	23	662	684	662	684	0.99
5	16	1.5e-05	0.0041	19.9	4.1	1	23	690	712	690	712	0.95
6	16	1.3e-05	0.0037	20.0	1.2	2	23	722	743	721	743	0.97
7	16	7e-05	0.019	17.8	0.4	1	23	749	771	749	771	0.93
8	16	3.7e-06	0.001	21.8	0.7	1	23	777	799	777	799	0.99
9	16	0.19	51	7.0	0.1	1	23	805	827	805	827	0.98
10	16	4.7e-06	0.0013	21.5	0.8	1	23	849	871	849	871	0.99
11	16	9.1e-05	0.025	17.4	0.5	3	23	879	900	877	900	0.96
12	16	2	5.5e+02	3.7	1.7	1	23	906	928	906	928	0.86
13	16	0.00049	0.13	15.1	3.4	1	23	934	956	934	956	0.99
14	16	6.6e-07	0.00018	24.1	0.7	1	23	962	984	962	984	0.99
15	16	4.3e-06	0.0012	21.6	1.7	1	23	990	1012	990	1012	0.98
16	16	1.6	4.3e+02	4.1	0.0	2	23	1021	1043	1020	1043	0.91

Sequence Information

Coding Sequence: atggCTGTAACTTGTGCCGCAGCTTCTTGTAAAGCCGACTGCACAAAGGAAGAATATGCTGGATTGGCATTTTTTCCATTTCCAATTGATGAaactatTTGTAAATCATGGATCGAAAGATGTGCAAGGTACGatttactaaacaaatcaaTTTCTGACCTAAATTTGTCAGAAAGGTTGTGTCAACTTCATTTTGAGGACCACTGTTATGACAATACTGAAATGGGATTCGTTCTAAAGCAGAGTGCGAGGCCGTCTTTATTTAACCACGACATGACTCAGTTTAATTCCCAAATAGATGAAGAAAGACGAATAAGTGTACACCCACATGTTGCAACAGTCCACTATGGCTCATTGGAAGATGGTGTCAACGTCATCACCTTCCAAGTAGAGATGGATAAACGAGGCGAAACAGAAAGGATGCACTTGGACAGGCAAGTGGTAAACTGTTTCAAAACCATGCAGGGGAGTGGCGAGATGATGGAACCATACAATATTGTGGTGGAGGAGGTCCAGACAATGCAGGTGTTGAATGAATGGGCCGCCGATGTGGAGCAACCTGCAACCAGCAAAACGGTTCACATGATTGATTTGCCAGTGTGCACAACTGAGGATCATGGTGATGGCGGTAATCTCCCTAGGATTGAGGGCGTAGGCACAGGGATGCGGCCTGCTGACATGTCAATGCATGTGATGGAGTTCCCAGTGTGCAGGATGGACCTAATGTGTCGAGTGTGTGCGGAGGAGTGCCACAACTTAGTACCTGTGTTTGGGGAGCAAGGGGTTGCCATGGACCTTCCCAAGAAAATCACTTGGTACCTCCCAATACAGGTGAAACAAGAGGACCAGCTTCCCCTAAAGTTGTGCTCGTTGTGCATCGCCAAGTTGAATTCCTGCCACGAGTTGGTCAACATGTGTGTTGCTGCCGACGCCAAGCTGAGGCGTTTGTTTTGTGCAGAGCCAAGCATCTTACGCAagCCATTGTTGAGGCCAACTGATGAAATGTCTGTACAAACCGAGTCTCGAGGTGATAGTACATGTGATCTGGACTCTGACGTAAATGAGCAGCGAATTCCAACAAAGGATGAGCCAGATGATGTGGCTATAGAAGAGGAGAACACTTTTCTGCTCAAtacaaaaacaagaaaaactTTCTTGAATGACCTTCGCCTGCATAAAGAAGACTATGGTGTTGCTGCAGAATGGAATCTTTCAGCAACTGCTCAGAAAAGGACCTGCGATGGTGTTGGCGGCACTGTGAAAAGGTGTGATGCTCCTTGCGACACTACAATTTCAAATGAAGAAACAGAGACAGATGATAACAATGAGAAATTAGATAACCAAATGATCTCCTTGTCAGATGCCTGCAACAAgactattgattttaaaaacggCCAAATTTATGAGGTACGTAAGGTGGTGGATGTCTACGTCGAGTCGGCAGACGAGACTTTAGACCCAAGTAAGAGGACGACAACCAAGTTTAGGATGGAAGTGTGTAGTGACATGAAGAGGACTAGTGCAGAGTTAAAGTCCAAGATTGATAGCGTGCAGGACATGATACAAACCACCAAGGAAGAGGTGGAGGTTTGTGTGAATGAAGACAACATAGAAGAGCAACTGTATGATGACAATGAGGAGGACAAACGTGTGATAAAATGTGTGCTTAATAATAAGAGAAAGTGTCCTCACAAAACTTCTTGGCAGTGTAAAAAGTGTGGCCACATGACCCGAAGAAAAGGTTCACTCATCATGCATCAGAGACAGAAACACAAACCTGACGAGTTCACTTGCTGTTACTGCGACAAACAGTTTCACAACGCCATCGCGTTGAGTGCTCACAAACGTTACCACAACAAGAAGTTAAAACAACCCGACAAATGCGAGCGGCCTTCATACGTCTGTGAACATTGCGGAAAATCCTTCCATATGAAAAAAACCCTTAAAGAGCACTACTTTGCTAACCACAGTGTGGAAAAACCTTTTCAGTGTAAAAAGTGCCATAAAACATATGGGTCATCAGTCAGTTTGGACATTCACATGGCGACTCATTCTAAAGAAACTCCTTTTCTTTGTGACTTATGCGGGAAGAGTTTCAAACACTTGACTAACCTAAGGAGTCACAAGCGGTCACACCTGGACAGTAGCCGCAAAAACCGCCAGGTGTGTGATTTGTGTGGAAAGGGGTTCCGATCGCGGTTCCACTTGTCAGAGCACATGAACATACACAACGGATTGCGGCCATACCCTTGCCCTGTGTGCAAAAAGAGTTTTGCCAAGAAGATTCAGCTTCGTCAGCACAGCTCAGCACACCTGGGCACCCAACCCTTCAAGTGCCCGACATGTGGGGTGGCGTTCAACCGTCGGGGCAACATGACCCAGCACCTCAAGAGACACGAACAGGAGCGCAAGTATGTCTGCAGGGTGTGCTTGATGGAGTTCATATCCCTGGGCGCAGTGTTGGCCCACCGCAAGAAGCACACTCAGGAGGAGGTGGAGCAGAGTCTCCGGCAGAAAGTAGGAGATGACCTTGAGGAGCATGCCTTCAAGTGTAAGGTGTGCGGAAAGTTCCTGGCTAAGAAAGACACGCTTGAGATTCACATGCGTTCACACTCAGGAGAAAAGTTGTTTGGGTGCTCAGTGTGCGGTAAGCGCCTATCCAATAAGGGTTCTCTCAACTATCACATGCGGGCGTTCCACACGGGTGAGCGTCCACACTCGTGCCAGTACTGCGGGGAGGGTTTCCTCTCCAGAGAGGCGTGCATGGTACATGAGCGCATCCATACTGGCGAGAAGCCCTTCAAGTGTGAGATGTGTACCATGGCATTCCGCTGTACCAGCAACCTGACCCAGCACATGCGAGTCCACTCTACTGAGCGACCATATGTGTGCCGAACCTGTGGCAAGCGCTTCCCTCGCAAGGGTACCTTGgatgtgcacatgcgcacacaCACAGGTGAGCGCCCCTTCAGCTGCAACATCTGTGGCCGAGGCTTCACGCAAAAGAACGATATGCTGAAACACAAGCGCACACACGTGGGTGGAGCAGAGTGGCCATGGCCATGCGCCGTGTGCGGGGAGCAGCTCATGAGCCGCACACAGCTGCTAGAGCATGAAGCGGTACAACACATGATGGTCCATGGCCGGCCTATAATCCCGGAACTCATCCATGTTGAGGTCCCTGTTGCGGGAGTACCTGACCCAGTAGCAGAGGCTTCTGTGGAAGGGGCAGAGCTTGTTGTGGAGGACCCACTCACACAGACCATTGTTATATCGACAGCAGATAATCTCATCGATAACTTCTCGCACATTGAGACTGTGACCGCTGCAGACAACACGCAGACACTCATATTGCAGAGGTTCTAA
Protein Sequence: MAVTCAAASCKADCTKEEYAGLAFFPFPIDETICKSWIERCARYDLLNKSISDLNLSERLCQLHFEDHCYDNTEMGFVLKQSARPSLFNHDMTQFNSQIDEERRISVHPHVATVHYGSLEDGVNVITFQVEMDKRGETERMHLDRQVVNCFKTMQGSGEMMEPYNIVVEEVQTMQVLNEWAADVEQPATSKTVHMIDLPVCTTEDHGDGGNLPRIEGVGTGMRPADMSMHVMEFPVCRMDLMCRVCAEECHNLVPVFGEQGVAMDLPKKITWYLPIQVKQEDQLPLKLCSLCIAKLNSCHELVNMCVAADAKLRRLFCAEPSILRKPLLRPTDEMSVQTESRGDSTCDLDSDVNEQRIPTKDEPDDVAIEEENTFLLNTKTRKTFLNDLRLHKEDYGVAAEWNLSATAQKRTCDGVGGTVKRCDAPCDTTISNEETETDDNNEKLDNQMISLSDACNKTIDFKNGQIYEVRKVVDVYVESADETLDPSKRTTTKFRMEVCSDMKRTSAELKSKIDSVQDMIQTTKEEVEVCVNEDNIEEQLYDDNEEDKRVIKCVLNNKRKCPHKTSWQCKKCGHMTRRKGSLIMHQRQKHKPDEFTCCYCDKQFHNAIALSAHKRYHNKKLKQPDKCERPSYVCEHCGKSFHMKKTLKEHYFANHSVEKPFQCKKCHKTYGSSVSLDIHMATHSKETPFLCDLCGKSFKHLTNLRSHKRSHLDSSRKNRQVCDLCGKGFRSRFHLSEHMNIHNGLRPYPCPVCKKSFAKKIQLRQHSSAHLGTQPFKCPTCGVAFNRRGNMTQHLKRHEQERKYVCRVCLMEFISLGAVLAHRKKHTQEEVEQSLRQKVGDDLEEHAFKCKVCGKFLAKKDTLEIHMRSHSGEKLFGCSVCGKRLSNKGSLNYHMRAFHTGERPHSCQYCGEGFLSREACMVHERIHTGEKPFKCEMCTMAFRCTSNLTQHMRVHSTERPYVCRTCGKRFPRKGTLDVHMRTHTGERPFSCNICGRGFTQKNDMLKHKRTHVGGAEWPWPCAVCGEQLMSRTQLLEHEAVQHMMVHGRPIIPELIHVEVPVAGVPDPVAEASVEGAELVVEDPLTQTIVISTADNLIDNFSHIETVTAADNTQTLILQRF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445856;
90% Identity: iTF_01450652;
80% Identity: iTF_01450652;