Tshe003725.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010000162.1:28030-56680[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00032 0.087 15.7 0.6 2 23 328 348 327 348 0.98 2 20 0.00055 0.15 15.0 0.8 1 23 354 376 354 376 0.98 3 20 0.0001 0.028 17.2 3.3 1 23 382 404 382 404 0.96 4 20 1.4e-05 0.0039 19.9 0.2 1 23 410 432 410 432 0.98 5 20 3.8e-05 0.01 18.6 2.7 1 23 438 460 438 460 0.98 6 20 4.6e-06 0.0013 21.5 2.2 1 23 466 488 466 488 0.98 7 20 2.6e-07 7e-05 25.4 0.4 1 23 499 521 499 521 0.98 8 20 2e-06 0.00055 22.6 0.4 1 23 527 549 527 549 0.98 9 20 4.4e-05 0.012 18.4 0.2 3 23 557 577 556 577 0.97 10 20 3e-05 0.0081 18.9 1.1 1 21 583 603 583 604 0.95 11 20 0.00045 0.12 15.2 2.2 1 23 690 712 690 712 0.95 12 20 0.0013 0.36 13.8 1.3 1 23 718 740 718 740 0.98 13 20 0.044 12 9.0 0.4 2 23 747 768 746 768 0.95 14 20 0.001 0.28 14.1 2.7 2 23 775 796 774 796 0.97 15 20 0.00054 0.15 15.0 1.8 1 23 802 824 802 824 0.96 16 20 0.014 3.7 10.6 0.3 3 23 835 854 834 854 0.98 17 20 8.4e-06 0.0023 20.7 0.6 1 23 859 881 859 881 0.98 18 20 0.00038 0.1 15.5 2.1 1 23 887 909 887 909 0.96 19 20 3.9e-05 0.011 18.6 4.0 1 23 915 937 915 937 0.97 20 20 0.00054 0.15 15.0 3.4 1 23 943 965 943 966 0.95
Sequence Information
- Coding Sequence
- atgaaaattcgACTATATGTGGAGGAGGAGTGTTTTGGATGCTCAACACTTTCCAGATTTGTCGAGTGTCAAAGACGAAACATTTCTTTGCCTGCACAGGTGTCCCAGGATGACAAGCTCCCAAAGAAGATCTGTAGCGACTGCGTCTACAGGGTGGAGAACTCGTATCAGTTCTGGAACACCACCTCCAACTCGGAGAGACAACTACTGGAATGGGTGGTGAACGATGTCAAGGTGGACAGTAAGAGCGACATCACCATGGAGACTGAGCAGCTGGTACTCAAGGAAGAGACCATCGACCACGACCAGACTGCCGCCGACGTGGCCAAGAGTCTGAGCCGAGTGGAGGCTGTCTTGACCGAAGAGACCGGCCAACCCGGTGGGGTCAGCGAAGAAGAGGAAGAAGAGGAGGACTCTGACGATGGAGGGGGAGGTGGTGGGGGTGAAGATTCCAACAGCGAAGAGAGTGGAGAAGAACCTCCAGGAAAGGAAGAGATAGAGTCTGAAgaggaggaggaagaggaaGAACCTTACGAAGAACTAGAGCCTACGACGTTTGTGAATGTGTCCTTGGCTTGTGACGAAGCCGGCCCTAGTGGCATACAACAGACTCGGCAGCAGACAAAGCAAGACAGTCAGGCCTCTGCGGCTAGTGCCTCTGCCACGACGGAAAACGCCGAAGCGCCGTCCACAAGTGCCGCGGATCCGGCCGCCAGTGGCGTTGAGATTTCCGTGTCTGTGATGTCGCTGAAAGTATCCACTGAAGCCACGAGTGAAAATTTCCACACGAGCGTCCACTCACCAGCTGAGCGGCTTTATTCCTGCTTGGGGCGTGGCAAGGCTCTGCTTGCTCACTGGATCCATTGTGATCTTTCTAAGAAACAATTGATGGATCACCCACTCATATCCCCCGCCAAATCTCGCCAAAAGTGTGTCAGGAAAGTGAAACGAAGATCACCCAAGAAAAGGCGTGATGGTGGCAAGTGCGAGTTCTGCGGTAAAGGATTTGTTCAAAGTAAGCTGGAGATACACAGGCGCACACACACTGGCGAATGCCCTTTCATGTGTAGTTCCTGCGGCATCACGTTTCTTAGCAACGGCAAGCTCAAATCGCACATGAACACCCACAGCGAGGTGAGGCCTCACGCGTGCACGACGTGCGACCGTAGGTTCAAACGTACCAAGGAGTTGAGTGACCACATGAAGATACACACAGGGGAAAAAGATTTCATCTGTAACATCTGCGGGGCAGCATATATACAGAAGTCGAACCTTGTCAATCACAAGAAGAGGCACTTTGGTCACTTCAGTTTCAAATGCCATGTTTGCGACAAGGGTTTTTATAGCAAGACGGAGTTGAAGGAGCATTCAAACATTCACTTGGGCGTGAAACCATTTGTCTGCGAGGTGTGCGGCAAGGCATACCCGTACAAACACAATCTAACCACCCACAAGCGCAAGCACGACCCTAAACACACTGTCTCGCCTAACAAGCACCAGTGTGAGGTGTGCGGGAAGGTGTTTGCCCAACGCGGGTCCCTCACTCTCCACATGCGTGCACACACGGGACAGGCCATCTTCGTGTGCAACATGTGCGGCAAGTCGCTGTCGAGTAAGGCGTCGCTCACTGTGCATGAACGCACACACACTGGAGAGAAGCCAAACATTTGTGAAACGTGTGGCAAGGCGTTCGCATCGCTAGAGTATCTGAAGATCCACGAGCGCAAACACACCGGAGAGAAACCTCATCGTTGCGATGAGTGCGGGAAATATTTCACTCAGCGCTCGTCACTCAGCATTCACAAGAGATGGAAGAAAAAAACTAAGTCTGGTAACTTAACTCGAACGAACAAGAGCACCTCTCTGAAGTTAAGCCGTAAGGTCAAGAAGTCTGTGAAGGCAACGCGCTTGCCCCGGCTTAGACGTAATGATAAGGAAGTTAAGGGTAAAGTATCAAACACGGGCCAAGCAGGTGATCTAGAAACAGACCCGGGGGTCGACCTGTGGTACAGTATCTACGACATGTACAGGAAGATGGAATCAAGTGCTGCACTTGCCAACGGCAAGTATCTCTGCAACATATGCGGCAAAATCTGTTCGAGCAAGACTAGTTTCAGGTATCACTTGGAGATTCACAGCGAGGTGCCCAAGTATAAATGCGACGTTTGTGACAAGCAGTTTCAAACGTATCCTAGACTTTTCAATCACAGGTTAATTCATAGAAAGAGTAAGGATCAAGTTTGCGATGTGTGCGGTTACTGCACTTACTATAAGGCCGCTCTGGATATACACAAGATGCTGCATTCGCAGAAGTTTAAACTTTACTGTGAGATTTGCAGCAAGGGTTTCAAGTCAAAATGCTATTACGACGACCACATGAACACGCACACTGGTAACAACCCGTATATTTGCGATATATGCGGGAAGGCGTTCCCTTGCAAGAGCAACTTAGCCAACCACAAGATCCACCACAAACCCGGCTACAAGCCTTACAGCCGCCTTTGCGAGATCTGCGGTGTAAGTGTCCAGCGCTCGAGCTACGAGAGCCATCAGCGGCGTCACAACAACGAGATGTACGATTGTGACATTTGCGGCAAGAAGATAACGAAGAAGAACTCTCTGATCACGCATATGCGTATGCACATGAACGACAAACCCCACGCCTGCGAGTTTTGCGGCAAGATGTTCGGCTCGACACGTTATCTCCGTCTCCATCGCCGCGTTCACACGGGTGAGAAGCCTCACATGTGCCAGTTCTGTCAGAAGAGTTTCTCTCAGCGGTCGTCTCTCATCATTCACACAAGGAACCATACCGGCGAGAAGCCCTATACTTGTGACATTTGCAATCATGGGTTTGTCAGCAGGAATCAGTTGACCAATCACAACCGAGCTCATCATTCTGAGCAGTCTCAGAAGTACAGGAAGTTTCTTGTTAACGACGAGAGAACTCTCACAGATAACTCTTTAGTTTAA
- Protein Sequence
- MKIRLYVEEECFGCSTLSRFVECQRRNISLPAQVSQDDKLPKKICSDCVYRVENSYQFWNTTSNSERQLLEWVVNDVKVDSKSDITMETEQLVLKEETIDHDQTAADVAKSLSRVEAVLTEETGQPGGVSEEEEEEEDSDDGGGGGGGEDSNSEESGEEPPGKEEIESEEEEEEEEPYEELEPTTFVNVSLACDEAGPSGIQQTRQQTKQDSQASAASASATTENAEAPSTSAADPAASGVEISVSVMSLKVSTEATSENFHTSVHSPAERLYSCLGRGKALLAHWIHCDLSKKQLMDHPLISPAKSRQKCVRKVKRRSPKKRRDGGKCEFCGKGFVQSKLEIHRRTHTGECPFMCSSCGITFLSNGKLKSHMNTHSEVRPHACTTCDRRFKRTKELSDHMKIHTGEKDFICNICGAAYIQKSNLVNHKKRHFGHFSFKCHVCDKGFYSKTELKEHSNIHLGVKPFVCEVCGKAYPYKHNLTTHKRKHDPKHTVSPNKHQCEVCGKVFAQRGSLTLHMRAHTGQAIFVCNMCGKSLSSKASLTVHERTHTGEKPNICETCGKAFASLEYLKIHERKHTGEKPHRCDECGKYFTQRSSLSIHKRWKKKTKSGNLTRTNKSTSLKLSRKVKKSVKATRLPRLRRNDKEVKGKVSNTGQAGDLETDPGVDLWYSIYDMYRKMESSAALANGKYLCNICGKICSSKTSFRYHLEIHSEVPKYKCDVCDKQFQTYPRLFNHRLIHRKSKDQVCDVCGYCTYYKAALDIHKMLHSQKFKLYCEICSKGFKSKCYYDDHMNTHTGNNPYICDICGKAFPCKSNLANHKIHHKPGYKPYSRLCEICGVSVQRSSYESHQRRHNNEMYDCDICGKKITKKNSLITHMRMHMNDKPHACEFCGKMFGSTRYLRLHRRVHTGEKPHMCQFCQKSFSQRSSLIIHTRNHTGEKPYTCDICNHGFVSRNQLTNHNRAHHSEQSQKYRKFLVNDERTLTDNSLV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -