Tshe003754.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010000162.1:275199-288186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.00011 0.031 17.1 0.8 3 23 22 42 20 42 0.94 2 34 8.8e-05 0.024 17.5 2.4 1 23 48 70 48 70 0.98 3 34 3.1e-06 0.00084 22.0 2.2 1 23 76 98 76 98 0.98 4 34 0.00089 0.24 14.3 0.5 1 23 104 126 104 126 0.98 5 34 7.6e-05 0.021 17.7 1.3 1 23 132 154 132 154 0.97 6 34 6.8e-05 0.018 17.8 0.9 1 23 160 183 160 183 0.97 7 34 8e-05 0.022 17.6 0.7 1 23 193 215 193 215 0.97 8 34 8.3e-05 0.023 17.5 0.6 1 23 221 243 221 243 0.95 9 34 4.7e-06 0.0013 21.5 1.4 2 23 250 271 249 271 0.96 10 34 1.7e-05 0.0046 19.7 3.3 1 23 277 299 277 299 0.97 11 34 3.4e-05 0.0091 18.8 0.4 1 23 305 327 305 327 0.98 12 34 0.32 86 6.3 0.3 2 23 371 391 371 391 0.90 13 34 0.032 8.8 9.4 1.5 3 23 399 419 397 419 0.90 14 34 0.0051 1.4 11.9 2.8 1 23 425 447 425 447 0.97 15 34 0.00017 0.048 16.5 2.8 1 23 453 475 453 475 0.98 16 34 0.0068 1.9 11.5 4.9 1 23 481 503 481 503 0.97 17 34 0.00069 0.19 14.6 1.3 1 23 509 531 509 531 0.98 18 34 1.9e-06 0.00053 22.7 1.4 1 23 537 559 537 559 0.98 19 34 2.5e-05 0.0067 19.2 3.4 1 23 570 592 570 592 0.98 20 34 0.00046 0.13 15.2 3.5 1 23 597 619 597 619 0.92 21 34 8.2e-05 0.022 17.6 0.1 2 23 626 647 626 647 0.97 22 34 1.8e-06 0.0005 22.7 1.3 1 23 653 675 653 675 0.97 23 34 6.9e-05 0.019 17.8 2.1 3 23 683 703 681 703 0.98 24 34 0.078 21 8.2 0.3 2 23 791 811 791 811 0.97 25 34 0.36 97 6.1 2.7 3 23 819 839 817 839 0.93 26 34 9 2.5e+03 1.7 5.9 1 20 845 864 845 867 0.91 27 34 0.00037 0.1 15.5 1.9 1 23 873 895 873 895 0.98 28 34 0.032 8.6 9.4 5.5 1 23 901 923 901 923 0.97 29 34 0.0014 0.38 13.7 1.0 1 23 929 951 929 951 0.98 30 34 1.5e-05 0.004 19.9 1.3 1 23 957 979 957 979 0.98 31 34 0.0015 0.41 13.6 5.8 1 23 990 1012 990 1012 0.96 32 34 1.2e-05 0.0033 20.2 1.9 1 23 1017 1039 1017 1039 0.95 33 34 1.4e-05 0.0037 20.0 0.5 1 23 1045 1067 1045 1067 0.96 34 34 3e-06 0.00081 22.1 1.9 1 23 1073 1095 1073 1095 0.97
Sequence Information
- Coding Sequence
- ATGTCTAAAACATGCAAGTTGGACATTCATGAAATTTTCAACGAATCGGCTTCCCCCCACTTGTGTCCTCCATGCGATAAAACTTTCAACAGTAAAAGAGAACTTGAAGCACACTTGAGACTCCACGCGAATCCTACAGAGTTTGTTTGTGAACACTGCAACAAAGTATTTACAGCAAATAAACGGTTGGTAAACCATCTTAAGACGCACAGCAAAGATCGCCCTTATTCCTGCGACATATGCAACAAGTCATACAAGCGTAGATATGAACTGACCATGCACAAGAGGATCCATACAGGCCTAAAAAGCTTCATCTGTAATATCTGTGGGTATGCTACTATGTACAAAGGGTACCTCAATATCCATTATAAAAGGCATTTAAACCAATTTAGTTTTAggtgtaatatttgtaaaaaaggGTTCTACACAAACTTCGAACTTCAAGTTCATAACAATGTCCATACCGGCACAAAACCACACCAATGCGACGTTTGCGGTAAAGCGTTCCTGTACAAAGCCAACTTGCTGACTCACCAGAGAGTGAACCACGAAAACTTGCAGGTGTTTCCCGCCTTATTCCAGTGCGAGCTTTGCAACCGCAGTTTCCCGTACAAAAAGTCTCTCTTGTTACACTTGAACGCTCATTCGGGTGAGATCCAGTTCTTGTGCGACGTGTGCGGCAAGTCGCTGACCAACGCGCGATCCCTGAAACTCCACAGGCGTCTCCACACGGGGGAGAAACCGTGCGTCTGCGGTGTTTGTGGGAAGGCATTCACCAAGAGCTACACCCTGAAAGTCCACCAGCTGACTCACACGGGGAAGAAACCTCACTCTTGCGACGTCTGTAACAAATCTTTCACCCAGCGCTCGACGCTTGTGGTCCACAAGCGCTACCACACGGGGCAGAGACCCTATATGTGCCCCGTCTGTAACAAGGGTTTCGTGGCCAAGACGATGCTCAACTCGCATCAGAGAAACCACGACCCGAGATGCAGCCTTCGGCAgGATGAAAATGATAGTAATGAGGAAACTCGCGGCAGTCCACGAGAGCTGAATAAAGGCGGCTCTTCGTTTCAGATCAGATTACAGGCTAGGAGAACAGACTTTGAAAAATGTAGAGTGTGCGGGGAACGGTTCAGTCCCGAAAAATTTATCCTACACAAAGTAATCCACACGGGTATAAAACCTCACATCTGCATCCTATGTGAGGCCAAGTATAGCACGAAAACCAAACTCCGGATCCACATGAAGATCCATAACGGCATGAAAGAGTTCAGATGCGAAACCTGCGGTAAAGAGTGCCTGAGCAGGAAACTTCTGCGTAGGCACATGGGTAGCCACAGTGAGGACCGGCCTTTCGAATGCGAAATCTGCTTTCGAAAATTCAAACGCTCTTACGAAGTCACCAAGCACAAAAAGATTCACATAGGGGAGAAGAATCACGTGTGTAACATTTGCGGCTACGCGACGATGCACAAGGCGTGTTTGGAAACCCATCAGAAACGACATTTGGGGGAGTTTATCTTCAAGTGTTTGGTTTGCGGTAAGGGTTTCTTCTCGAGCTTCGAGTATAGAGAACATAAGAATGTTCACACGGGTGATAAACCCTACATGTGTGACATGTGTGGGAAGTCGTATACTTCCAAGAACAGTCTGATGGCTCACAAGAAGACTCACGAACCCGACGCCAAGCCGACGGAAAAGGTGCATCAGTGCGGCTACTGCgataaaagtttcaaatatcGGAAATCTCTGCTCGTGCACGTCAAGTCGCATTCGGGAGAGAAGTTTCTCTGCGATTTTTGTGGCAAGGCGTTCTCGACTAAAGACAGCCTTAAACTTCACTGCCGCAACCATACGGGTGAGAAGACGAACGTGTGCACGGTATGTGGTAAGGCGTTCAGTGCGCTCTACACGCTCAAGGTTCACCAACTTATCCACACGGGTGAGAAGCCTCACGTTTGTGAAATGTGTGGGAAGGCGTTCACCCAGAGGTCCACTCTTGTGGTTCACAAGCGCTCGCACACTGGAATGCGTCCATACGGTTGTCACATCTGCACTAAAGGTTTTACATCTCGGACGCTTTTGAACAATCATTTGAAGATTCACGACGAAGACGTGTATTACAAACACTTAGGGTGTTATATCCAACTCTGTGGGGGGGAGCGGTTCAAGGAGTTATCGTGCCATTATAACCCAACACCgtgggggccCGACAGTAAGAAGAAAGTAAACAAGATTAGTTGTAAACCCAAACTTATCAAAACGGGCGTGAGCGGCTCTTCAATAAGGTTGAGAGGGAGGCGCGAGAATAGGCGCACACCAAAGACTAAGAAGACAATCGCCGGCGTCTCCAAGAAATTCACCGAAAAGTGTAAAGTGTGCTGGGAACGTTTCAGCCCCGAAAAGTTCGCCGTGCACAGACAGGTCCATTCCGGTGTGAAACCTCACCTGTGCCTTTTCTGCCTGTCCAAGTACAGCACCGTAACGCAACTGAGGATACACATGAGGAGCCACAAGGGCAAGCAAGAGTACAAGTGCGAGACTTGCGGTAAACAATGTCTGAGCGGGAAGCACCTGCTGGAACACATGAGCTGCCATAGTCAAGACCGACCGTACCAGTGCGACGTATGCCTCAGGAGGTTCAAGAGGCCTTTTGAGgtcaaaaaacataaaaagatcCACGAAGGCGAGAAGAACCACATGTGCAACCTATGTGGTTTCGCCACCGTTCACAAGGCCTGCCTAGAGACTCACCAGAAAAGACATCTGAGGGATTACACCTATAAGTGTTCGGTCTGCGGGAAGGGTTTTTTCTCCGGCTTTGAGTTTAGAGAGCATAAGAATATACACACGGGGGAAAAACCTTACATGTGTGACATGTGCGGGAAGGCGTACACATCCAAGAACAGCTTGATGTCGCACAAGAAATCTCACGAGACCGACACCACGGCGATAGAGAAAACGCACGCTTGCCAATACTGCGATAAAAAGTTCAAACACCGCAACTCTATGATCATACACTCTCGGACGCATTCCGGGGAAAAGTTCCTGTGCGATTTCTGCGGTAAGGCGTTCTCGTCTAAAGACGGCCTCAAAGTCCATCACCGCAACCACACAGGGGAGAAGACGCACATTTGCTCTATGTGCGGTAAGGCGTTCAGCACCCTAAGCGTGCTCAAAGTCCACCAGCTCATCCACACGGGAGAAAAGCCGCACGTGTGCGAGTTTTGCGGCAAGGCGTTCACCCAGAAGTCGACGCTTGTTGTCCACAAGCGCTCGCACACCGGCATGCCTGGTTGCCCTTCTCGGTGGGAAGGTTCTCGGCTGAAACCAGGGATGATCCGTATCCCGGTAGGCCACACCGGCAGAAACATCGGTAGTCCACCGAGTCGCTCTGCTCACTCGAGTAGTGGAGGAGCGAATGTGCCGAGAATGAGTGAGACAAAGTGA
- Protein Sequence
- MSKTCKLDIHEIFNESASPHLCPPCDKTFNSKRELEAHLRLHANPTEFVCEHCNKVFTANKRLVNHLKTHSKDRPYSCDICNKSYKRRYELTMHKRIHTGLKSFICNICGYATMYKGYLNIHYKRHLNQFSFRCNICKKGFYTNFELQVHNNVHTGTKPHQCDVCGKAFLYKANLLTHQRVNHENLQVFPALFQCELCNRSFPYKKSLLLHLNAHSGEIQFLCDVCGKSLTNARSLKLHRRLHTGEKPCVCGVCGKAFTKSYTLKVHQLTHTGKKPHSCDVCNKSFTQRSTLVVHKRYHTGQRPYMCPVCNKGFVAKTMLNSHQRNHDPRCSLRQDENDSNEETRGSPRELNKGGSSFQIRLQARRTDFEKCRVCGERFSPEKFILHKVIHTGIKPHICILCEAKYSTKTKLRIHMKIHNGMKEFRCETCGKECLSRKLLRRHMGSHSEDRPFECEICFRKFKRSYEVTKHKKIHIGEKNHVCNICGYATMHKACLETHQKRHLGEFIFKCLVCGKGFFSSFEYREHKNVHTGDKPYMCDMCGKSYTSKNSLMAHKKTHEPDAKPTEKVHQCGYCDKSFKYRKSLLVHVKSHSGEKFLCDFCGKAFSTKDSLKLHCRNHTGEKTNVCTVCGKAFSALYTLKVHQLIHTGEKPHVCEMCGKAFTQRSTLVVHKRSHTGMRPYGCHICTKGFTSRTLLNNHLKIHDEDVYYKHLGCYIQLCGGERFKELSCHYNPTPWGPDSKKKVNKISCKPKLIKTGVSGSSIRLRGRRENRRTPKTKKTIAGVSKKFTEKCKVCWERFSPEKFAVHRQVHSGVKPHLCLFCLSKYSTVTQLRIHMRSHKGKQEYKCETCGKQCLSGKHLLEHMSCHSQDRPYQCDVCLRRFKRPFEVKKHKKIHEGEKNHMCNLCGFATVHKACLETHQKRHLRDYTYKCSVCGKGFFSGFEFREHKNIHTGEKPYMCDMCGKAYTSKNSLMSHKKSHETDTTAIEKTHACQYCDKKFKHRNSMIIHSRTHSGEKFLCDFCGKAFSSKDGLKVHHRNHTGEKTHICSMCGKAFSTLSVLKVHQLIHTGEKPHVCEFCGKAFTQKSTLVVHKRSHTGMPGCPSRWEGSRLKPGMIRIPVGHTGRNIGSPPSRSAHSSSGGANVPRMSETK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -