Tshe003737.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema shepardi
Gene Symbol
-
Assembly
GCA_902151425.1
Location
CABFVX010000162.1:131256-146032[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 43 0.0091 2.5 11.1 0.2 2 23 44 66 43 66 0.95
2 43 0.092 25 8.0 2.2 1 21 71 91 71 93 0.93
3 43 0.011 3.1 10.8 0.4 1 23 99 121 99 121 0.98
4 43 0.025 6.8 9.7 0.3 1 23 127 149 127 149 0.95
5 43 4.2e-07 0.00011 24.8 1.7 1 23 155 177 155 177 0.98
6 43 0.11 31 7.7 1.6 1 23 187 209 187 209 0.94
7 43 5.5e-06 0.0015 21.3 0.1 1 23 215 237 215 237 0.98
8 43 8.2e-08 2.2e-05 27.0 1.3 1 23 243 265 243 265 0.99
9 43 7e-05 0.019 17.8 3.0 1 23 271 293 271 293 0.99
10 43 0.0028 0.77 12.7 0.6 2 23 348 369 347 369 0.95
11 43 0.00036 0.098 15.5 0.5 1 23 385 407 385 407 0.97
12 43 0.0028 0.77 12.7 0.0 2 23 414 435 413 435 0.97
13 43 3.8e-07 0.0001 24.9 1.4 1 23 441 463 441 463 0.98
14 43 5.4e-06 0.0015 21.3 1.4 1 23 469 491 469 491 0.99
15 43 0.0039 1.1 12.3 0.3 2 23 512 533 511 533 0.97
16 43 0.00025 0.067 16.0 1.5 2 23 540 561 539 561 0.97
17 43 0.16 45 7.2 3.2 1 23 567 589 567 589 0.98
18 43 0.071 19 8.3 1.7 2 23 596 617 596 617 0.97
19 43 0.00041 0.11 15.4 3.3 1 23 623 645 623 645 0.98
20 43 0.044 12 9.0 4.7 1 23 656 678 656 678 0.96
21 43 0.00071 0.19 14.6 0.1 2 23 685 706 684 706 0.97
22 43 2.7e-07 7.3e-05 25.4 0.7 1 23 712 734 712 734 0.98
23 43 3.3e-05 0.0088 18.8 4.9 1 23 740 762 740 762 0.98
24 43 0.00018 0.049 16.5 4.6 1 23 768 790 768 790 0.97
25 43 3.7e-05 0.01 18.6 0.5 2 23 837 858 836 858 0.97
26 43 0.00071 0.19 14.6 4.9 1 23 863 885 863 885 0.97
27 43 1.3 3.6e+02 4.3 5.2 1 23 891 913 891 913 0.98
28 43 0.039 11 9.1 1.5 2 23 920 941 919 941 0.97
29 43 0.00035 0.096 15.6 5.2 1 23 947 969 947 969 0.98
30 43 0.6 1.6e+02 5.4 6.4 1 23 980 1002 980 1002 0.97
31 43 0.00083 0.23 14.4 0.1 1 23 1008 1030 1008 1030 0.98
32 43 1.4e-06 0.00039 23.1 0.3 1 23 1036 1058 1036 1058 0.98
33 43 3.4e-06 0.00092 21.9 0.6 1 23 1064 1086 1064 1086 0.98
34 43 0.00036 0.097 15.5 4.5 2 20 1141 1159 1140 1162 0.94
35 43 0.013 3.6 10.6 4.6 1 23 1168 1190 1168 1190 0.98
36 43 0.0044 1.2 12.1 2.7 1 23 1196 1218 1196 1218 0.99
37 43 0.0031 0.85 12.6 0.8 2 23 1225 1246 1224 1246 0.95
38 43 0.00034 0.093 15.6 2.3 1 23 1252 1274 1252 1274 0.96
39 43 0.17 47 7.1 6.6 1 23 1285 1307 1285 1307 0.96
40 43 0.00037 0.1 15.5 0.0 1 23 1313 1335 1313 1335 0.98
41 43 1.8e-05 0.005 19.6 0.1 1 23 1341 1363 1341 1363 0.97
42 43 1.7e-06 0.00047 22.8 2.1 3 23 1371 1391 1369 1391 0.97
43 43 4e-06 0.0011 21.7 1.2 1 23 1397 1419 1397 1419 0.98

Sequence Information

Coding Sequence
ATGTTCCTTTGTGAAACCTCGCCAGCTCCAAGACCAGCTCCAAGAGCAGCTCCGCGGCCGGCTCCAAGACTGAATCAAGTTATCACTCTTCTCAAACCCAAGCAACCAGAACCTAAAAGGGACCTCTGGAAGTGCACGCCGTGCGGTCAAAGCTTTGCCCTCCTCTCGGAGTTTAAAAGCCACATAATGTCGCAGCACCGACGAAACTCGCACCCGTGCGATATGTGCGACCTTAAGTTCATATCCCCGGTACGACTCGCCAAACATAGGAAATGTCACGGGGTGATGATAAGATACTCGTGCGATATATGCGGCTATTCCGGGCAGAGCAAGACGTTGGTGGAAACGCACCGGAAGATGCATTACAACGAGTACAAGTATTACTGCAGTATCTGTTCCCGAGGTTTTAACGTGGTGAAACTCTTGAAGGAACATGAGCTGTTGCATACTGGAATCAAACCGTACCAGTGTGAGGAGTGCGGAAGACAATTCACCTCAAAGTACAATCTCGCCAAGCATAAGCGGCTTCACGAGCCGGGCTACAAAGACAATCCCAAGTTCTTTTGCGAGTTTTGCGGTCGGTCGTTCTTGTACAGCACGGTCTTGAACAAGCACCGCAGCGGTCACCTGGGCGAGAACCGGTTCGAGTGCGACGTTTGCGGTAAGGTTGTCAACTCCAAGGAGTACCTGAAGGTCCACCTTCGTATCCACAACGGGGACAAACCCTACGTGTGTGACATCTGCGGCAAGGCGTTTGTGACCAACAAGCACCTGACCGTTCACAGACGCACGCATACGGGGGAGAAACTTTACACGTGTAACGTATGTCACAAGTCATACACACAGGTGGGGTACCTCACCATCCACAAGCGCTCACACACGGGAGAGCGCCCGTTGGTAAACTTGATTACGGGTAGTGCGCAGGCCAACCCAGCCTTGATGCCAAACGTAGCTTCAGTTGTAAAACAGAACATTGCTTGCGATAAGACCGCCGAGAAGGTTTCGGTGAAACGGTCTTTATTCGGCGACGGGATTCAATGGAGGTGCAAGGTCTGCAATAAGATCTTCCGACAGGATTGGCAGTACAAACTTCATCTCGTGTCTCATGTGAAAGAGTACACGTGCAACATCTGTTTCAAGGACAACCCAAAGTATTACTGTGAGATTTGCGGGAAAGGTTTCTTGTACAAATCGGCGTTGAACAATCACCGAGAGAACCATCTCGGCAGCAATAAGGTCGTGTGCACCATTTGTGATGTGCCGCTTGCGTCGAAAAAATACATGACGGTCCACATGCGAATACACAGCGGAGAGAAACCGTTTATTTGTGACGTTTGTGGTAAGGCGTTTGTCACCAACAAGCATTTAACGGTTCACCGGCGCACGCATACGGGAGAGAAACTGTACACTTGTAACGTGTGTAACAAATCATTCACGCAAGTGGGTTATTTGACCATTCACAAGCGCTCTCATACTGGCGAGCGCCCATATCGATACAACATTTCAAAGCAAGTCCCCTCCGACTCGACCATAAGATGTGAAATATGCAGTAAAGAATACAAGCTCGATATCAATCTGAGCCGCCACATGGCAAAACACAACCCGGATAACCAGATTAAATGTGACGTGTGTGACAAAACATGTCCGTCTGGGTTTCAACTGAAGCAACACATGAAAATCCACGAGACGGTGAAGCTATACTCGTGCGATATGTGTTCATATGCGAGCCACGTACAAGTGAACCTGCACGCTCATAGAAAGAGGCACTTCAACGATTACAAGGCGAGGTGTGACGTGTGTAACAGAGGTTTCTACTCCATGTGTTCGTACAAGTTACACCAGGCCGTCCATAAAGACGAGATGCCCTTCAGTTGCGACGTCTGCGGTAAGCTGTACAAGTTCAAACACTACCTAACCGACCACCTTCAGACGCACAAACCAGACTACGAGGAAACCGTTTTAAAGTTCAAGTGCCGATATTGCGGCAAGGGTTTCCGCTACCGGGGGAAGTGTGAGGTCCACGAGAAGCGGCATCAGGGACACAAAGAAGTGATGTGCGACATATGCGGCAAAGCGCTGAGCACGGTCCGCGAGCTGGGCCTCCACATGCGCCGTCATACCGGGGAGAAACCGTACGTCTGCAGCTATTGCGGAAAGTCGTTCAGTCGGTTGAACTCGTTGACTCTCCACGTGCGTGTACATACGGGCGAGCGCCCATACACTTGTGACGAATGTGGGAAGTCGTTTACGCAGCACTCGAGCTATGCTATCCACAAGCGCCATCATACCGGTGAGAGACCTTATTGTTGTTTGATCTGTCAGAAAACCTTCGTGTCCAAGTCTTTGATGAAGTACCACATGAAGTCTCACGAAGAACACAAGTCCCCAACAAGTAGTTTCTTTGTCAAACAATCCGAGGAAAAATCTAAAAGCTCCAAGGTTAACAGGAAAGCTTCAAACTCTCTTTCTGGACCTGTTAAGAGGAAGGTATCTAACAAAAAGTCAATCAAATGTAAAATTTGCGGAAATGAGTACAAGCGCAATAGCACTCTGCAGAATCACTTGCTTATCCACGGTCAGGATTCCCACGAGTGCGACCTTTGTAACAAACCATTCAAGTCCGAGTGGCATCTGAAACAGCACAAGAAATACCACAGCAAAGCGAGACAGTACAAATGTGACATGTGTGGATACGAGACGTGTATCAAGGGTAACCTCCTCTGTCACAAAAGGAAACACTTGAAACATTACATTGTCAAGTGTGAGGCGTGTAATAAAGGTTTCTATAGGACATGTGATTACCAAGAACATGTTAAAATACACACGGGCGAGAAACCCCACCAATGCAACAAGTGCGGAAAGTCGTTCCCCGGCAAACACCGACTGGCCAATCACAAGAAAACCCACGAACCGGACTACGAAGAGACAGTTCTTCGGTTCAGGTGCAAGTTTTGTAACAAAGGTTTCCCCGGTCAGAGTCTGTGCACGAGGCACGAGAAACACCACCTGGGCGTTAAGGAGTTCATCTGCGACGTTTGCGGCAAAGCCCTCAGCTCGGCGCACGCCATGAGTCTCCACCTTCGCATCCACACCGGGGAAAAACCGTTTGTGTGCGACTTCTGCGGTAAGATGTTTGGTCGGTCGTCTGCTCTCACTATGCACTTACGTGTTCACACGGGTGAGCGCCCTTATGTGTGCAACGTGTGCGAGAAGGGTTTCACGCAGCCGTCGACGCTCACGATTCACAAGCGTTACCACACGGGCCAGAAACCTTACGAGTTCACAAGCGATAACATTGTTTCTAAATCGTCGGAGAAATCCAAACGCCACAGCAAGAACTCTTTGATTTCGCCAAAGCCGCTATCTAGTACTATAGAACTTATGGAATTGGAGTGGGGGAGCGCAGAGAACCCCAAATGGAAATGTAAAATATGCGAGAAAGTGTTCAAACATAAATGTTCTCTGAAGAACCACATGCCGCTTCATAACACCGAGGGCTCTTTCAAATGCGACATCTGCCATAAGTTGCTCAAATCAGATTATCAGTTGACTCGACATAAAAAGAACCACAGCCAACTGAAAGACTACAAATGCGGCATCTGCGGCTACGAGACGTGTTCCAACAGTAAAATCGAGAGCCATAAGAGGAGACATCTGAATGAGTACAAAGTGAAGTGTGAGCTGTGTAATAAAGGTTTCTACACCTCACGAGAGTTCCAGGAGCACTCCATGCTCCACACAGGAGAAAGGCCCCACTCCTGCGAGGTCTGCGGCAAGTCCTACCCCAACAAATACCGGCTGACGGACCACAAGAAGCTGCACGAGCCCAACTACGAGGAGATGTTCCTCAGGTTCAAGTGCCGGTTCTGCGACAAGGGCTTCCCCCGGCAAAGCTCTTGCGTCCGTCACGAGAAGCACCACCTGGGCGTCCGGGAATACGCCTGCGATGTGTGCGGCAAGGCGCTCAGTTCGGGGCCTCTCCTCAAGCTCCACATGCGCATCCACACGGGGGAGAAACCATTTGCCTGCGACGTGTGCGGTAAATCGTTTGGGCGCGTGTATGCCTTGACCATGCACTACCGTGTCCACACGGGTGAGCGCCCGTACGGTTGCTCTGTGTGTGGAAAGAGATTCACACAACACTCGAGTCTAACAATACACATGCGCTATCATACGGGGCAGAAGCCGTACGTGTGTAGCACATGTACGAGGTCGTTTGTTTCCAAAACTTTGCTGACGGCCCACATGAAGAGTCACGCGCACTAA
Protein Sequence
MFLCETSPAPRPAPRAAPRPAPRLNQVITLLKPKQPEPKRDLWKCTPCGQSFALLSEFKSHIMSQHRRNSHPCDMCDLKFISPVRLAKHRKCHGVMIRYSCDICGYSGQSKTLVETHRKMHYNEYKYYCSICSRGFNVVKLLKEHELLHTGIKPYQCEECGRQFTSKYNLAKHKRLHEPGYKDNPKFFCEFCGRSFLYSTVLNKHRSGHLGENRFECDVCGKVVNSKEYLKVHLRIHNGDKPYVCDICGKAFVTNKHLTVHRRTHTGEKLYTCNVCHKSYTQVGYLTIHKRSHTGERPLVNLITGSAQANPALMPNVASVVKQNIACDKTAEKVSVKRSLFGDGIQWRCKVCNKIFRQDWQYKLHLVSHVKEYTCNICFKDNPKYYCEICGKGFLYKSALNNHRENHLGSNKVVCTICDVPLASKKYMTVHMRIHSGEKPFICDVCGKAFVTNKHLTVHRRTHTGEKLYTCNVCNKSFTQVGYLTIHKRSHTGERPYRYNISKQVPSDSTIRCEICSKEYKLDINLSRHMAKHNPDNQIKCDVCDKTCPSGFQLKQHMKIHETVKLYSCDMCSYASHVQVNLHAHRKRHFNDYKARCDVCNRGFYSMCSYKLHQAVHKDEMPFSCDVCGKLYKFKHYLTDHLQTHKPDYEETVLKFKCRYCGKGFRYRGKCEVHEKRHQGHKEVMCDICGKALSTVRELGLHMRRHTGEKPYVCSYCGKSFSRLNSLTLHVRVHTGERPYTCDECGKSFTQHSSYAIHKRHHTGERPYCCLICQKTFVSKSLMKYHMKSHEEHKSPTSSFFVKQSEEKSKSSKVNRKASNSLSGPVKRKVSNKKSIKCKICGNEYKRNSTLQNHLLIHGQDSHECDLCNKPFKSEWHLKQHKKYHSKARQYKCDMCGYETCIKGNLLCHKRKHLKHYIVKCEACNKGFYRTCDYQEHVKIHTGEKPHQCNKCGKSFPGKHRLANHKKTHEPDYEETVLRFRCKFCNKGFPGQSLCTRHEKHHLGVKEFICDVCGKALSSAHAMSLHLRIHTGEKPFVCDFCGKMFGRSSALTMHLRVHTGERPYVCNVCEKGFTQPSTLTIHKRYHTGQKPYEFTSDNIVSKSSEKSKRHSKNSLISPKPLSSTIELMELEWGSAENPKWKCKICEKVFKHKCSLKNHMPLHNTEGSFKCDICHKLLKSDYQLTRHKKNHSQLKDYKCGICGYETCSNSKIESHKRRHLNEYKVKCELCNKGFYTSREFQEHSMLHTGERPHSCEVCGKSYPNKYRLTDHKKLHEPNYEEMFLRFKCRFCDKGFPRQSSCVRHEKHHLGVREYACDVCGKALSSGPLLKLHMRIHTGEKPFACDVCGKSFGRVYALTMHYRVHTGERPYGCSVCGKRFTQHSSLTIHMRYHTGQKPYVCSTCTRSFVSKTLLTAHMKSHAH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01446802;
90% Identity
iTF_01446802;
80% Identity
-