Tshe003739.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema shepardi
Gene Symbol
-
Assembly
GCA_902151425.1
Location
CABFVX010000162.1:152625-170425[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 54 0.99 2.7e+02 4.7 0.4 10 23 2 15 1 15 0.93
2 54 0.00086 0.23 14.3 1.5 1 23 21 43 21 43 0.98
3 54 0.00027 0.075 15.9 3.9 1 23 49 71 49 71 0.98
4 54 0.0039 1.1 12.3 2.4 1 23 77 99 77 99 0.97
5 54 0.0034 0.92 12.5 2.6 3 23 107 127 105 127 0.95
6 54 0.49 1.3e+02 5.7 6.0 1 23 138 160 138 160 0.95
7 54 0.00036 0.098 15.5 0.2 2 23 167 188 166 188 0.97
8 54 1.8e-05 0.005 19.6 0.6 1 23 194 216 194 216 0.98
9 54 0.44 1.2e+02 5.8 0.7 1 15 222 236 222 236 0.89
10 54 9.5e-07 0.00026 23.7 1.9 1 23 243 265 243 265 0.99
11 54 0.064 18 8.4 0.1 2 17 273 288 272 294 0.89
12 54 0.19 52 7.0 0.1 1 13 300 312 300 316 0.87
13 54 2.4e-05 0.0065 19.2 4.1 1 23 338 360 338 360 0.97
14 54 0.00055 0.15 14.9 1.6 1 23 394 416 394 416 0.97
15 54 0.00069 0.19 14.6 1.1 1 23 422 444 422 444 0.98
16 54 7.4e-08 2e-05 27.1 1.6 1 23 454 476 454 476 0.97
17 54 9.7e-05 0.026 17.3 0.1 2 23 483 504 482 504 0.97
18 54 5.1e-06 0.0014 21.4 1.5 1 23 510 532 510 532 0.98
19 54 4.7e-06 0.0013 21.5 4.3 1 23 538 560 538 560 0.97
20 54 8.9e-05 0.024 17.4 2.1 1 23 626 648 626 648 0.97
21 54 1.4e-06 0.00038 23.1 2.9 1 23 654 676 654 676 0.98
22 54 0.0017 0.45 13.4 2.5 1 23 682 704 682 704 0.98
23 54 0.002 0.55 13.2 0.2 2 23 711 732 710 732 0.96
24 54 0.034 9.2 9.3 3.8 1 23 740 762 740 762 0.98
25 54 0.003 0.82 12.6 6.3 1 23 772 794 772 794 0.97
26 54 0.007 1.9 11.5 0.3 2 23 801 822 800 822 0.97
27 54 6.4e-05 0.017 17.9 0.2 1 23 828 850 828 850 0.98
28 54 4.8e-05 0.013 18.3 0.9 1 22 856 877 856 877 0.96
29 54 0.00036 0.098 15.5 2.2 1 23 956 978 956 978 0.98
30 54 0.00016 0.043 16.6 2.6 1 23 984 1007 984 1007 0.97
31 54 1.1 2.9e+02 4.6 5.1 2 21 1014 1033 1013 1035 0.91
32 54 2.6e-05 0.007 19.1 1.0 1 23 1041 1064 1041 1064 0.98
33 54 0.0001 0.028 17.3 1.8 1 23 1069 1091 1069 1091 0.99
34 54 0.016 4.4 10.3 1.9 1 23 1101 1123 1101 1123 0.97
35 54 1.9e-05 0.0051 19.6 0.7 1 23 1129 1151 1129 1151 0.98
36 54 2e-06 0.00054 22.6 0.7 2 23 1158 1179 1157 1179 0.97
37 54 2.7e-05 0.0074 19.1 3.7 1 23 1185 1207 1185 1207 0.98
38 54 0.12 32 7.6 1.3 2 23 1307 1329 1306 1329 0.95
39 54 0.011 2.9 10.9 3.3 1 21 1334 1354 1334 1356 0.94
40 54 0.00048 0.13 15.2 2.7 1 23 1366 1388 1366 1388 0.98
41 54 3.9e-05 0.011 18.6 0.8 1 23 1394 1416 1394 1416 0.98
42 54 3.4e-05 0.0093 18.8 0.2 1 23 1422 1444 1422 1444 0.99
43 54 2e-05 0.0054 19.5 1.4 1 23 1450 1472 1450 1472 0.98
44 54 0.047 13 8.9 0.0 1 23 1481 1503 1481 1503 0.96
45 54 3e-06 0.00082 22.1 0.9 1 23 1513 1535 1513 1535 0.98
46 54 0.0011 0.31 14.0 1.7 1 23 1541 1564 1541 1564 0.95
47 54 4.4 1.2e+03 2.7 6.6 1 23 1570 1592 1570 1592 0.97
48 54 4.8e-05 0.013 18.3 1.2 1 23 1598 1621 1598 1621 0.97
49 54 0.0087 2.4 11.2 1.7 1 23 1626 1648 1626 1648 0.99
50 54 0.00019 0.053 16.4 3.4 1 23 1658 1680 1658 1680 0.98
51 54 8.4e-06 0.0023 20.7 0.0 1 23 1686 1708 1686 1708 0.99
52 54 5.9e-08 1.6e-05 27.4 0.3 1 23 1714 1736 1714 1736 0.99
53 54 3.1e-07 8.3e-05 25.2 2.0 1 23 1742 1764 1742 1764 0.98
54 54 0.00051 0.14 15.1 0.8 1 23 1770 1792 1770 1792 0.98

Sequence Information

Coding Sequence
ATGTACAAACGCAACAGCACGCTCCGGAACCATATGGTCGTCCACGACAACAGTCACTCGTACGAGTGCGACATCTGTCGGAAGGAACTGAAGTCAGAATGGCATCTGAAGCAGCACGTCAAGAGCCACATGAGGGAGAAGAAATTCAAGTGTGATATCTGCGGGTTCCAGTTCGGTCATAAATACAGTTTAGAGAACCACAAAAAGAGGCATTTGAAAGATTACCGACACAGATGTGATATTTGTAACCGAGGGTTTTACAGTAACAACGAATTTCTCGAACATAAAAAGGTGCACACAGGTGAAAGGCCACATCTCTGCGAGATCTGTAACAAGTCTTATCCAAATAAATACAGACTGATCTATCATAAAAAGATGCACGAGCCCGACTACGAGGAGATGTTTCTACGGTTCAAGTGTAAGTTCTGCGAGAAAGGTTTCCGACAGCGTAGCAAGTGTGTCCTCCACGAGAAGCGGCATGTCGGACAGAAGGAGCTGGTGTGCGACGTTTGCGGTCAGGCTCTCCACACCCCGACCGAGTTGAAACTTCACATGCGCATGCATACCGGCGAGAAGCCTTTCATCTGCAACTATTGCGCCAAGGCGTTCAGTCGGCTGACGTCTCTTACCATGCATCTACGCATCCACACGGGCGAACGGCCGTACCCTTGTATCGAGTGTGGGAAGAGATTCACACAGAAGCACAACTCGAGTAGGCCTCATCAATACCAATGCGAGCTTTGTGGGAAATCTTTCAACCAGAGAAGTTCTCTTCGTCTGCATAGTAGACGACACGCAGGGGAGGTGCACTTTTTGGTTTGCGATTATTGCGGGAAGACCCTTGCGGACAAGGGGTCGCTCAAGTCACAACAGCGAACCCACATGGGTGACCGGCCTTACAGCTGTGATTCGTGCGGCAAGTCCTTTGTGAAGCGTGGCGTTCTGGCGGTCCGGTTTCCTTACAACTCCATGTTGGGGAGCCATCTGTTGAGCCACACGGAAACCAGACCCTATTCGTGCCATGTCTGCGGGAAGAAGTTCAAACGCAAATACGAGGTACGGAAACACGCAAAGTTGCACGCGTTCGAGCGGGATTACGTGTGCGACCTGTGCAACTATTCGACCAACTGCAAGCATAACTTTGGCGTCCACCGCAAGAGACATTTTAAGCAATGTGAGTTCCGGTGTGATGTTTGTCAAAAGGGTTGCTATTCTAAAGGGGAGCTGCAAAAACACACCGCTGTTCATTTGGAAGGTAAACCTTACTCGTGTGAAGTTTGCGGATTGTCCTACTCGTACAAGAACAATTTATCTTTCCACATAAGAAAACACGAACCGTCCTATAACCCCAGTAAAGACTACCAGTGTGAAATCTGCGGGAAAACGTTCACCAACCGCAGCAACCTGACGAGCCATGTCAAATTTCATCTCGGCAAGAACAAGGTGGTGTGCGATATGTGTGGCAAGAGCCTGTCGAGCGGAGAGAGCCTCAAGATGCACATGCGCGTCCACACGGGGGAGAAACCGTTCTCATGCAGCACGTGCGGTAAGGCGTTCAAGGACAAGGGCTACCTGAGGACTCACAGACTGTCTCATACGGGGGAAAAGCCGCACACCTGCGATCAGTGTGGGAAGTCCTTCACTCAGCGCTCGACACTCACTGTTCACAAACGTTACCATTCCGGAGAGCGACCGTTGTCACATTCTTACACGAGTATCAACAAAAGAAACACGAAGGCTGACAAACAAGAGAAAcagaaaaagaaaactaaaaaatacgGAATACTGGCAAAAATTCTGCAATTGAAAGACGACCATACATCTGCAAATTCCTTTTACGATTCCAGCTCTAAATACGTTTCGCCAACCGGCGGTTTTCGCTGTGATATTTGCGAGAAATGCTATGCAAGGGAAGGGCAACTAAACAAGCACAAGGTCACACACAGCGAATTCCGCCCTTTCCACTGCTCCATTTGCCCGAAAACGTTCAAACGCAAGTATGAACTCAACACGCACATACAGATTCACAACAAGGAAGGCAGGTATTCATGTGATGTGTGCAAGTACTCGACGATGAAGAAATCTAATCTGACTCTTCACAGACAACGACACTTCAATCAGTATAATATCAAGTGCGAGGTTTGCGGGAAAGGTTACTACACCAATTATGAAATGAGGCTCCATAAAGCTGTCCACATTCACGGGGAAACAAAACCTTTTGTTTGTGACGTGTGTGATAAACAATTCTACTGCGAGTACAACCTAAATCTGCACAAGAAAAGACACAACTCTGACCAGCAATCAAAGGAGAAATTCACATGCGAACACTGCGGGAAAAAGTTGCATTCGCGCTCGGAACTAACGAGGCATTCCAAATATCACTCGGGTAACTTCCAGGTGGTCTGCGACATCTGCGGTAAGTGCCTCTCCGGGACGAACGTGCTGCAAGTCCACCGCAGGATCCACACGGGGGAGAAGCCGTTTGTTTGCGACATGTGCGGGAAAGCGTTCAGTGCCTTGAGCTACCTCGTGCTCCACAAACGCTCGCACACGGGAGAGAAGCCGTTTCCTTGCGGGAAGTGTGGGAAGTGTTTCGCCCAACGCTCGAGCCGCACCATTCACATGAGGGTGGCAAGTATATTGAATACTGCCCCTGAAGGAGTTACAGGGGGTGCCAACGTTTGGTGGGTGATTATACCCAACTCCCAGATGCACAACCATGAACACACGGAACTTTCATCggtaaaaaatgaaaagagtGAATTGGTTCTTGACAAACACACAGACTTGTCCGAACGAAAACGCCCAGCCCATAATATTTCTCATGAAAAATCTAGAACTAAAAAACTACTCCAGTCGAGGGAATTCGAGTGCCCGATATGTGGGAAAGTTTGTGAGGCAAAACATCGCTTAAAGTATCACATAATGACCCACGATGAGTCTCGCCCGTACAAATGTGACGTGTGTGACAAACCTTTCAAAAACACGTGGCACGTGAAGAAACACAAGAATATAACTCACCTGGGAGTAAAAAACTGCGTGTGCAAAGTTTGCGGCTATGCCTCGTTTTATCGATCGCAGTTAAAGCAACACGAAAAATGTCACGGCGGTACATTCAAGTACAAATGCGAACTTTGCGAGAAATCTTTCCCGAACAAGACAGCTTTCCAAGCACATCGAATAACTTTCCACGGTGAAGAGCCTTATAAATGTGCCGAATGCGGCAAAACATACTCCAAGAAACGGACTTTGGACGATCATACAAAGTCTCACATTCCTGGTTATAAGCCCGTCATGAAGCATCAGTGCGAGCTCTGTGGGAAGACATTTCTAAGAATAAACGAACTCTATGTCCACAACCGGCGGCACAGTGCGGATAAAACTCACACCTGCCCATTGTGTGATAAACCGTTGTCATCGCCCCAGTCATTGAAGTACCACATGCGGATCCATACGGGAGAGAAGCCGCTAGTTTGCGATACGTGCGGGAAATCTTTCAGAACCTCCCAACTTCTCAGGGTTCACCGGAGGGTACACACGGGGGAAAAGCCGTATTCTTGTGACCTCTGTCCCAAGTCCTTCTCGCAGTGCTCGACTTTGACTGTCCACAAACGCTACCACACAGGGCAGAGACCATATATTTGTCAGCAACTTGGCTCAGAGCCCCGGCTGAATGCGATAGATTGTGCCAAAAAAGAACTCGGAGTGAGTAAAAATGACTCATTGTCGGTTATGGAGAATTCATCGTACACTCTTCATAAAAATGAACCAAATAATTTGGACCAAATACATTCTCGAGTTTCAGAACAATTGCCCAAAAATCAGAAGCGTAACGCGGCCAAGAAATATTCCCAACCTTACGAATGTCAAACGTGTGTCAAACTCCACGAGCGGATACATACCAGAGAGTTTAACATCAGATGTGACAAGTGCGGGAAAGGATTCCCTTGCCTCTTGACTCTTAGGTCACATTTGATTACCTTTCACGGCGCGGAGCCCTTTACCTGCACCGCTTGCGGTAAGACTTACACCAAAGACTCCAGTTTACGAGCGCACACAAAGTGTCATTCACCGGGCTACACCCACGAGAAGAAGTTTCAGTGCGACTGTTGCGGCAAAACTTTCCGGACCAAGATGCAGTTGGTGGTTCATGGGAGGAGCCACACCGGGGAAAGAAACTTTCCCTGCGAAAAGTGTGAGAAAGCCTTCTCGTCCAAACACATGTTGGTAGGGCACTTGCGGATACATACGGGGGAAAGGCCCTACGTGTGTGAAACTTGCGGGAAAGGTTTCCGAACGTTGGACATTTTGAGACTTCACATCAGGACCCATACGGGCGAGAAACCATTCTCGTGCGACATTTGTTCCAAGTCTTTTTCCCAACGTTCGGCAATGAACATTCACAAACGTAACCATGATTCTCTTCAGGCTTTGAAAAGATATCCTTGCGATGTGTGTGGTCGAGGCTTCCCACTTGAATCGATCCTCGCGGACCACATGCTGGAGCACGACGGGGCGCTCAAGGAGAGCCAGGAGTATCCGTGTCCCACGTGCGGCCGCATCTACAAGCAGAAGAGCAAGTTGAAGACTCATATGGTGAGACACTCTGACGTGAGGAACTTCCCCTGCGACACGTGCGGTAAAATGTTCAAGAGAAGGTTCGAGGTCGACAAGCACAAGAAGTTGACCCACTCCAACGAGAAGCGGCACTCCTGCTCTCTGTGTGGCTACAAGGCATACCACCTGTCGCAGATAAAGCATCACGAGAAACGACACGTGGGGGGTTTCAATTATAAGTGCGAGGATTGCGATAGGAGCTACCCCCTTCAATCGGAACTGAAGGCTCATCGGATAAGCTGCCACAACGACGAACCTTACAAGTGCCCGACTTGCCTCAAGTCCTACGGTATCAAAAGAAACTTTGACACCCATCTGAAGACTCACGAACCGGGCTACATAGCGGAGAGGAAGTTTCAGTGCGAGTCTTGCGGCAACACATACCGTCACAAGTCTGACCTGATAAAGCACCGGTTAAAGCACACGGGTGAGAAGAAATATGTGTGCAAGGTGTGCGAAAAGTCTGTTGCGTCTCAAGGATCCCTCATCGCGCACATGAGGATACACACGGGAGAGAAACCGTATGTCTGCGACATCTGCGGCAAGGCTTTCAGTAGCTATGACTATCTGAAGGCTCACCTACGCACGCACACGGGTGAGAAACCGTACTCCTGTGAGATCTGCAACAAGTCGTTCTCTCAACAGTCGACACTGACTGTACACAGGCGCTACCACACAGGACAGAGACCCTATGTGTGTTCAATCTGCTCTCAAGGTTTTGTGACAAAAACTTTGCTAAGCACCCATTCCAAGACTCATTCTTTCAGAGATGACAACTGA
Protein Sequence
MYKRNSTLRNHMVVHDNSHSYECDICRKELKSEWHLKQHVKSHMREKKFKCDICGFQFGHKYSLENHKKRHLKDYRHRCDICNRGFYSNNEFLEHKKVHTGERPHLCEICNKSYPNKYRLIYHKKMHEPDYEEMFLRFKCKFCEKGFRQRSKCVLHEKRHVGQKELVCDVCGQALHTPTELKLHMRMHTGEKPFICNYCAKAFSRLTSLTMHLRIHTGERPYPCIECGKRFTQKHNSSRPHQYQCELCGKSFNQRSSLRLHSRRHAGEVHFLVCDYCGKTLADKGSLKSQQRTHMGDRPYSCDSCGKSFVKRGVLAVRFPYNSMLGSHLLSHTETRPYSCHVCGKKFKRKYEVRKHAKLHAFERDYVCDLCNYSTNCKHNFGVHRKRHFKQCEFRCDVCQKGCYSKGELQKHTAVHLEGKPYSCEVCGLSYSYKNNLSFHIRKHEPSYNPSKDYQCEICGKTFTNRSNLTSHVKFHLGKNKVVCDMCGKSLSSGESLKMHMRVHTGEKPFSCSTCGKAFKDKGYLRTHRLSHTGEKPHTCDQCGKSFTQRSTLTVHKRYHSGERPLSHSYTSINKRNTKADKQEKQKKKTKKYGILAKILQLKDDHTSANSFYDSSSKYVSPTGGFRCDICEKCYAREGQLNKHKVTHSEFRPFHCSICPKTFKRKYELNTHIQIHNKEGRYSCDVCKYSTMKKSNLTLHRQRHFNQYNIKCEVCGKGYYTNYEMRLHKAVHIHGETKPFVCDVCDKQFYCEYNLNLHKKRHNSDQQSKEKFTCEHCGKKLHSRSELTRHSKYHSGNFQVVCDICGKCLSGTNVLQVHRRIHTGEKPFVCDMCGKAFSALSYLVLHKRSHTGEKPFPCGKCGKCFAQRSSRTIHMRVASILNTAPEGVTGGANVWWVIIPNSQMHNHEHTELSSVKNEKSELVLDKHTDLSERKRPAHNISHEKSRTKKLLQSREFECPICGKVCEAKHRLKYHIMTHDESRPYKCDVCDKPFKNTWHVKKHKNITHLGVKNCVCKVCGYASFYRSQLKQHEKCHGGTFKYKCELCEKSFPNKTAFQAHRITFHGEEPYKCAECGKTYSKKRTLDDHTKSHIPGYKPVMKHQCELCGKTFLRINELYVHNRRHSADKTHTCPLCDKPLSSPQSLKYHMRIHTGEKPLVCDTCGKSFRTSQLLRVHRRVHTGEKPYSCDLCPKSFSQCSTLTVHKRYHTGQRPYICQQLGSEPRLNAIDCAKKELGVSKNDSLSVMENSSYTLHKNEPNNLDQIHSRVSEQLPKNQKRNAAKKYSQPYECQTCVKLHERIHTREFNIRCDKCGKGFPCLLTLRSHLITFHGAEPFTCTACGKTYTKDSSLRAHTKCHSPGYTHEKKFQCDCCGKTFRTKMQLVVHGRSHTGERNFPCEKCEKAFSSKHMLVGHLRIHTGERPYVCETCGKGFRTLDILRLHIRTHTGEKPFSCDICSKSFSQRSAMNIHKRNHDSLQALKRYPCDVCGRGFPLESILADHMLEHDGALKESQEYPCPTCGRIYKQKSKLKTHMVRHSDVRNFPCDTCGKMFKRRFEVDKHKKLTHSNEKRHSCSLCGYKAYHLSQIKHHEKRHVGGFNYKCEDCDRSYPLQSELKAHRISCHNDEPYKCPTCLKSYGIKRNFDTHLKTHEPGYIAERKFQCESCGNTYRHKSDLIKHRLKHTGEKKYVCKVCEKSVASQGSLIAHMRIHTGEKPYVCDICGKAFSSYDYLKAHLRTHTGEKPYSCEICNKSFSQQSTLTVHRRYHTGQRPYVCSICSQGFVTKTLLSTHSKTHSFRDDN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-