Tshe052898.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010009770.1:2419-2886[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-08 1.8e-05 26.8 0.0 1 39 15 57 15 60 0.93
Sequence Information
- Coding Sequence
- ATGTCGAGAGGAAGGAAAAGAAAAAGCCAAAAGGGAACTTTCTCTGAAGAAAATATGCAAACTGCTGTAGGGCAAGTTTTGTTGGGGGAAGAAGGTAGAAAACTGTCTCTTCGGGAAGCTGCTTCTTTGAATGGAGTATCATTTCAAACATTGCAGAGATATATTAAGAAACAAGTGAATAATCCTTACCCTGAAGTCGAAGTTATAATGGTCGCTAACTACAAACATCGTTTAGTTTTCAATTCGGAAGAGGAAAAATCTTTATCAAACTACATGGATCAGTGTTCTAAAATGTGCTATGGAAAGTCAACTAAAGATTTTCGTGAGTTAGCATATGAGATGGCaaagattaattcaaaaactaTGCCTCCTTCGTGGGAAATAAAACAGAAATCTGGGATTGATTGGCTCCAGGGTTTTTTAAAGAGGCATCCAGAGCTTGAGTATCCGACAACAAGAAGGTTGTAG
- Protein Sequence
- MSRGRKRKSQKGTFSEENMQTAVGQVLLGEEGRKLSLREAASLNGVSFQTLQRYIKKQVNNPYPEVEVIMVANYKHRLVFNSEEEKSLSNYMDQCSKMCYGKSTKDFRELAYEMAKINSKTMPPSWEIKQKSGIDWLQGFLKRHPELEYPTTRRL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450441; iTF_01444666;
- 90% Identity
- iTF_01444666;
- 80% Identity
- -