Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.8e-08 1.9e-05 26.7 0.1 2 35 14 47 13 51 0.94

2 2 7.4 4.9e+03 -0.2 0.1 23 30 240 247 240 248 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.8e-08	1.9e-05	26.7	0.1	2	35	14	47	13	51	0.94
2	2	7.4	4.9e+03	-0.2	0.1	23	30	240	247	240	248	0.89

Coding Sequence: ATGTTAAGTCGGTCAAAGAAAAGGAGGAGGTTGTGGGAGCCCGCGAACATGAAAGCGGCCATTTTAGCGCTGCAGAGCAAAGAGATGGGGCTCCTTAAAGCGGCGAGACGGTTCCATGTGCCTAGGAGCTCACTCGCACGCATATCTTCGGTGTTGAAGGACAACACGGACGTGACCTTGGAGGATCTGATGCGTCCCCGGCTCGGCAGGAAGCCCACCCTTCCTTCGGACCTGGAATCGGAGCTCTTAAGATGCTGCCTCTTGGTCAAAGAGCGTTTCTACTCGCTGACAAATGATGACATCTGCGCTCTGGCTTACCGGCTGACGGAACAAAGGAAGATATCGCACTCGTTCAGTCCGGCAAAGAAAACCGCTGGTAAGAAATGGCTGAATTATTTCAAGAAGCGACACCCGGACCTTGTGTTGAGCTCGTATTTTTCGACTGGGTCCAGTGAATTCCAtgtgaaaaatagtttaaagttcTACGATATTTTAGAGGCGGAGTACAAGAAAAACAACTTCTCCCCCGATCGGGTGTACACCGTCTTGGGTGTGGGGTTCTCATGCCTGCACAAAGACTCACAGAAAGTGACATTACTGAGAAAAGAGTGTCAAGACGGTCATTGGAAAACTTACGAGGAAACTCAACTTTTGGGAGCGCTGATTTGCGCGAATGCGCTTGGCAGTTATGTGCCACCTTACGTGCTACTTTCAGATGCAAATATATACAACATCCCATTCAAATACATCCCCCCCCCAAACTGCCTTCAACACCAGGTGCGCCAGCTGGATGGATCAGGATTCCTTTACGATGTGGTTCAAACATTTCGTGAAACACGTAAACCCGACCGTGGACAATCCAGCCCTTCTGATTTTGGACGGTAA
Protein Sequence: MLSRSKKRRRLWEPANMKAAILALQSKEMGLLKAARRFHVPRSSLARISSVLKDNTDVTLEDLMRPRLGRKPTLPSDLESELLRCCLLVKERFYSLTNDDICALAYRLTEQRKISHSFSPAKKTAGKKWLNYFKKRHPDLVLSSYFSTGSSEFHVKNSLKFYDILEAEYKKNNFSPDRVYTVLGVGFSCLHKDSQKVTLLRKECQDGHWKTYEETQLLGALICANALGSYVPPYVLLSDANIYNIPFKYIPPPNCLQHQVRQLDGSGFLYDVVQTFRETRKPDRGQSSPSDFGR*

Sequence clustering based on sequence similarity using MMseqs2