Tshe016999.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010001182.1:103236-105134[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-09 9.3e-07 30.9 0.1 3 39 17 53 15 57 0.89
Sequence Information
- Coding Sequence
- ATGCCTTCTAACTATGTTAGAAAGTCAACACAGCAAAGCTGGGATGCTGGAGCAATGGCACGTGCAGTACAGGCTGTGCGTGATGGAATGGCCTATGCAACCGCAGCTAGAAATTTCAATGTTCCCAGAAATACACTAAAGAGAAGAgcgttaaataaaaacatagatgCCGTTGAAGGTAAGAAAATTCTTGGGAAGTTTCGTAGTATTTTTAACGAAGAGCAGGAAAGAGTGCTTGTGGATTACATCCTTGACATGGAAGTGAGACTGTTTGGAATCTCGCGTAATGATTTACAGCATCTAGCTTTTCAATTAGCAGAAAGAAACGGActagaacataattttaataaggagAGAAGTATGGCTGGAAAGGACTGGATAAGAGGTTTTCAACGACGGCATCCTAATGTGACTTTACGAAAGCCAGAGGCTACATCTGCTGCAAGGGCAAGAGCGTTTAATAGGCCTAATGTAATGAATTTTTTCTCACTATTGGAACAGGTCCAGACCAAACACTTTTATCCTCCTCACAGAGTGTTCAATGTCGACGAGACAGGTTTGACAACAGTGCAGTCAAAAAGTTCCAAGGTTTTTGCTTTAAGAGGAAGGCGTCAAGTCGGATCTTTGACCTCAGCCGAAAGAGGAGTTTTGTCTACCCTAGTTATTTGTATGTCAGCAGGTGGAAATTTTGTTCCACCATTGGTGATCTTTCCAAGACAAAGGATGAAGGTAGAGTTGCAGGACGGCGCTCCCCCAGGAACGGTGTTTTTTTGTCATCCTTCTGGGTGGATGCAGACTGAGATATTTACAGAATGGTTCAATCATTTCTTGGCTCATGCTAAGCCCACTGTTGAAGATCCAGTTCTGTTATTGCTTGATGGTCATACAACACATACCAAAAACTTGGACTTTATTGACAAGGCTAGGGAAAACCACACAACAGTTATCTGCCTACCCCCACACTGCAGTCACAAACTACAACCTTTGGATGTCACCTTTAATGGACCACTAAACACCTATTTTGTTCAGGCAATTGAGAAGTTTTTGAGAAACAACCCTGGAAGGTTAGTGACACAGTATCAAATCTGTCGGTTATTTGGTGAAGCATATCTTCGTGCAGCTACTCCATCTATAGCAATCAACGGGTTCAGACGCTGTGGTCTAGTGCCATTAGATCCAAATGTTTTTGGCGATGCTGATTTTGCTCCTGCAGAAACAACTGATTGTGTGGTTGATGATGAACCTGAAAAACAACCTCAAGATAAAATGCAGGAAGTAGTAGCCCTACAACAAATGCCAGGTATAGAGACAGAAGAAACCCAAGAGGAAGAAACAATGGAAAGCAACGTTCCTTCAACAAGCGCTCACTCCTCTGGAAGCGCTGACTCCCCCGATAGAAACAATTTGACAACCACTGCCAACCCCGCTAAAATCAATGTAGAACCAGTGCCTGGAACGTCTTTTGCTGTAAGCCCCAAATATATTATGCCAATACCACACCCATATCGTCAAGTATTAAAGACAAAGCGCAAGAAGGGAAAAGCAGCAGTGCTGACATCAAGTCCGTATAAATCTGAATTGGAATCTGCaaaagaagtaaaaaagaaaaaagaatctgaaagagaagaaaaaaagaaaaaagcagCTTACGCAAAAGGAACTGTTTGCTCCAAGGACTCAAAAAGGAAGAAAGTGTCCAAAGTAAGCAAacaattaactaataataaagcCAGTGACGATGAAAGGGATCCTCTTTGCATGTACTGTAATGAGGCTTACTCGAACTCCAAAAGTGACGATGGTTGGATTAGGTGCTCTTCATGCCTGTGTTGGGCCCACGAAGCATGTGCTGGATGCGAAGAAGAGgatgataattttgtttgtgatcTTTACCATTAA
- Protein Sequence
- MPSNYVRKSTQQSWDAGAMARAVQAVRDGMAYATAARNFNVPRNTLKRRALNKNIDAVEGKKILGKFRSIFNEEQERVLVDYILDMEVRLFGISRNDLQHLAFQLAERNGLEHNFNKERSMAGKDWIRGFQRRHPNVTLRKPEATSAARARAFNRPNVMNFFSLLEQVQTKHFYPPHRVFNVDETGLTTVQSKSSKVFALRGRRQVGSLTSAERGVLSTLVICMSAGGNFVPPLVIFPRQRMKVELQDGAPPGTVFFCHPSGWMQTEIFTEWFNHFLAHAKPTVEDPVLLLLDGHTTHTKNLDFIDKARENHTTVICLPPHCSHKLQPLDVTFNGPLNTYFVQAIEKFLRNNPGRLVTQYQICRLFGEAYLRAATPSIAINGFRRCGLVPLDPNVFGDADFAPAETTDCVVDDEPEKQPQDKMQEVVALQQMPGIETEETQEEETMESNVPSTSAHSSGSADSPDRNNLTTTANPAKINVEPVPGTSFAVSPKYIMPIPHPYRQVLKTKRKKGKAAVLTSSPYKSELESAKEVKKKKESEREEKKKKAAYAKGTVCSKDSKRKKVSKVSKQLTNNKASDDERDPLCMYCNEAYSNSKSDDGWIRCSSCLCWAHEACAGCEEEDDNFVCDLYH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448412;
- 90% Identity
- iTF_01450439; iTF_01446449; iTF_01444662; iTF_01448410; iTF_01448411; iTF_01448412; iTF_01450435; iTF_01446444; iTF_01444658; iTF_01449491; iTF_01449501;
- 80% Identity
- -