Tshe012689.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- mbr-1_1
- Assembly
- GCA_902151425.1
- Location
- CABFVX010000786.1:102204-103203[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-12 1.3e-09 40.1 0.0 1 39 15 53 15 61 0.89 2 2 3.5 2.3e+03 0.8 0.1 13 25 55 67 51 67 0.80
Sequence Information
- Coding Sequence
- ATGCCGCGCCATTACGAAAGAAAAACGAATAGGGCGAGTTGGACTGAAGAAAGTATGTCAGGAGCTATACGAGAAGTTTTACAAGGGAAAATGGGTTACAAGAGAGCGTCACAAGTTTATGGTGTTCCCCAGTCAACATTGGAGGATAGAATTAGAAAGGCCCGAAAAGAAAGTTTGTCTCCCCAAAAAGCTGCCAAAAAGAGGGTCCTAGCACTACGCGGGAAAAAACAAGTAGGATATTTGTCATCAGCGGAAAGAGGCACACTTGTGACAGTCGAAACATGCATGAACGCAGCAGAGAATTTCGTGCTGCCTATGTTTGTCTTCccaagaaagaaagaaaatgctAAGTTGATGGATGATACACCTCCTGGCTCACTTGCTGTCTACCATAATAGTGGGTGGATCCATAAAGAGGCTTTTGTTGTCTGGTTCAAGAAATTCATCGAATTTTCCCATCCCTCATCTGAAAAACCTGTGATGTTACTTTTGGACGGGCACGCCTCTCATACTAAAAGTCTAGAGCTTATTAACCTAGCAGGGAAAACCATGTTATCATCTTGTGTTTTCCCCCGCATTGCACACATTGCTTACAGCCACTAG
- Protein Sequence
- MPRHYERKTNRASWTEESMSGAIREVLQGKMGYKRASQVYGVPQSTLEDRIRKARKESLSPQKAAKKRVLALRGKKQVGYLSSAERGTLVTVETCMNAAENFVLPMFVFPRKKENAKLMDDTPPGSLAVYHNSGWIHKEAFVVWFKKFIEFSHPSSEKPVMLLLDGHASHTKSLELINLAGKTMLSSCVFPRIAHIAYSH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -