Tshe078536.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010092114.1:1-299[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.4e-14 5.6e-11 44.4 0.1 3 43 14 54 12 56 0.90
Sequence Information
- Coding Sequence
- ATGTTAGAAGTTAAGAAGAAACGGGGCCTTTGGAATGATGAATGTCTGGAAGCTGCCATGAAAGCTGTACAAAGAGGACAACTATCTCAACGTGCAGCGTCAGAACGCTATGGAGTGCCTAGAAGAACATTAAGGAACCATTTGAAGACAGAGAAGACGACGAAAAGCTTAGGAGGAAAGACTGTTCTAACAAAAGAACAAGAGAAGAACTTGTTAGAAAGAATAGTAAAGTTTGCTTCAATTGGTGTCCCTTTAACTCCAAAAGCTATACGAAggcaaacatttatattttgtgaacaN
- Protein Sequence
- MLEVKKKRGLWNDECLEAAMKAVQRGQLSQRAASERYGVPRRTLRNHLKTEKTTKSLGGKTVLTKEQEKNLLERIVKFASIGVPLTPKAIRRQTFIFCEX
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444631;
- 90% Identity
- iTF_01444631;
- 80% Identity
- -