Tshe039801.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010004831.1:16366-45793[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-11 3.3e-08 35.5 0.0 1 38 446 484 446 489 0.90 2 4 1.6e-12 1e-09 40.3 0.1 1 39 500 538 500 541 0.95 3 4 1.1e-17 7.3e-15 56.8 0.0 1 45 555 600 555 600 0.97 4 4 1.1e-18 7e-16 60.1 0.1 1 43 607 650 607 651 0.97
Sequence Information
- Coding Sequence
- ATGGTAGCACCTCTGGCATTGGCTCTCACCACAGTGGTTTGTCCCAGTCTCCCCATATTGTGCTGGAGGGGACCAATCACAGCTCAAGTAACACCACAGATGTGGACATACCTCCGGAAGCACAGCCACCTGCACCGTCTGCAACGCTGCTCTGGCCAAGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAAGAAAGAGGTGTAGACGAGGAGGAGGGGACTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGACGAGGAGGAGGGGACTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGACGAGGAGGAGGCTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTCTCTGGCCAAGAAAGAGGTGTAGAGGAGGAGGAGGCTGACTATGTTGGTGTTAGCTCTGGCCAGGAAAGAGGTGTAGACGAGGAGGAGGCTATGTTGGTGTTAGCTCTGGCCAGGCCTAATGTTATCCAGTTAACATCAGATGCAGATGGTTCTAGTGTGTCTCAGCGAGAAACTGAAGATGTTAAAGTTAAGTTTGAAACCCTACGTGCCATGGAACAGGCGGAAACTATTGACATAAACAGCCACTTGTCCGACAGAGTAAGTGACCATAATGTAGGTGAGGATGAACATACAATGCACACTATGATGATCACACCAGAACTACTTGGGTTAATTCCTTCATCGTCGGGACAATCGGATGTGAGTAGCGACGCAGGCAAATGTGGCATTATGGGCCCCAAGACGTGGACACAGGAGGATATGGAACTTGCCTTGGATGCACTGAGAAACCACAACATGAGTCTTACTAAGGCATCTGCAACTTATGGCATTCCTTCCACCACTTTGTGGCAACGAGCTCACCGCATGGGGATTGACACTCCCAAAAAGGAGGGTCCCACTAAGTCTTGGACAGAGGAAAACCTCAATAGTGCACTGGAGGCACTCAGAACTGGCTCTATATCTGCTAACAAAGCCAGCAAAGCTTATGGTATACCCAGCAGTACCCTGTACAAAATTGCGCGTCGTGAAGGAATACGTTTGGCTGCTCCATTTAATGCTGCGCCTACAACTTGGACTCAAGATGACCTTGAACGAGCTCTAGAAGCTATTCGTTCAGGACAAACATCGGTTCAACGTGCCTCTACAGAATTTGGGATTCCTACAGGGACATTATACGGCCGTTGCAAACGAGAAGGTATTGAACTTTCTAGGAGTAATCCTACACCATGGTCAGAAGATGCAATGGGTGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAACCAAGCGGCAATTCACTACAATCTTCCGTATTCTTCCTTGTATGGCAGATTTAAAAGGGGCAAGTACGAGGCGGAGGGGCACCAGCATCCGGATGAAACGGGCCACCACTCTCCCCCGACATCGGCACCACAGCAACAACCCCCACAGCAGCAACCCCCTCCACCCCCACAACACCACTCCCCTCAACAACATCCTATGTACCAGCAGCATGCCCCTCACAGCGCGAGTTGA
- Protein Sequence
- MVAPLALALTTVVCPSLPILCWRGPITAQVTPQMWTYLRKHSHLHRLQRCSGQERGVEEEEADYVGVSSGQERGVDEEEGTDYVGVSSGQERGVDEEEGTDYVGVSSGQERGVEEEEADYVGVSSGQERGVEEEEADYVGVSSGQERGVEEEEADYVGVSSGQERGVEEEEADYVGVSSGQERGVEEEEADYVGVSSGQERGVEEEEADYVGVSSGQERGVEEEEADYVGVSSGQERGVEEEEADYVGVSSGQERGVEEEEADYVGVSSGQERGVEEEEADYVGVSSGQERGVDEEEAMLVLALARKEVSGQERGVEEEEADYVGVSSGQERGVDEEEAMLVLALARPNVIQLTSDADGSSVSQRETEDVKVKFETLRAMEQAETIDINSHLSDRVSDHNVGEDEHTMHTMMITPELLGLIPSSSGQSDVSSDAGKCGIMGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNSALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHQHPDETGHHSPPTSAPQQQPPQQQPPPPPQHHSPQQHPMYQQHAPHSAS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -