Tshe000406.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema shepardi
Gene Symbol
ct
Assembly
GCA_902151425.1
Location
CABFVX010000013.1:648081-666076[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.7 5.9e+04 -3.4 0.1 16 41 318 343 314 350 0.72
2 2 1.4e-27 4.6e-23 83.4 0.0 3 72 540 610 538 615 0.95

Sequence Information

Coding Sequence
ATGCACCACTTTTCCAGAAGTCCCGAGACTTCTCTGGCAATGGAGCTTGCCGCGGCTTGTCACGCCTCGCCTCTATTGGGCGTGCTTCTATttgttaatacatattttactcaAGAGGAAAGTTTCTCCGTGCCGTGCCTTGCCTTGCCTCTAGGTGGTAGGCAGAttgagATCTCACAGCTCGTGGAAGATGTGCAGCGGTTGCAGGCCAGCATCTCGAAACTGCAGGAGAGCTCAGCGGGCAAGATCGCTCGTCTGGAGGAGCAACTAGACCACAAGAGGCAGCACATTGCGAGGCTGGAGTCGAGGCTTGAGGCACAAAGGGACTACGACGATGTCAAACGGGAGCTTAGTATTCTCAGGACAATCGAGTTCCCTCCACTTGGTCCTGGTGGTAATCCTGCTGAAATCCCCAATCAATCTATTGAGATGTTACTCTTGGAGAGGACGAAAGCTCTTCAGCAAGTTGAGAATGCAGAGTTGAAATCTACTCCGACTGTTGCTGACGTCGAAGGTAGTACAACTACAACTACCACCACGAACTCCACAACGTCACATCACATGTTGGAGTCCCACTCTCACTCTATGGGTCattcttttgaaaattctaCTGCCCAGCCTCCACCTATCCCTCCACCTTCTACACTCCCTCCTTCCATaatattcccccctcccctacaaAATGTAGAAACCTTTGGTTCTTTCCTCGGTGAAGAAATTGTCGCAAACTGGCGTCGTTCTCTCGAACGTACGATCCTGAGTCAAAGTCATGCCGCTGCCATTTCTTCATCAgttcaccatcaccatcatcaccaacaacaacaacaacaacaacagcatCAGCAACCACTACAACATTCACACCAACCTATAGTAAGTCTTCACTCCCCCACAGATCCTTCACAGACAGCGCCGTCAACGCCGAACCCTTCGACCCCGCAACAATCCACATCCGAAAtggaaaacaacaaaattatagaGTCTTCGGAATCTTCCCGTGCCCTTTCTTCTTCCTCAACAACGTCCTCGGCATTTGCGACCGCGTCAACACCCACCTCTCTCACTTTGGTGAACACTACCTCTGCCATTTCCTCCCCATTGGCTGCACCGACGCTGACTACAACGACTTCTTCAGCAGTCTCCGGAGGTGATATAAGCTTACCTcttcatcatcaccaccatcaccaccatcaccacctcATGAACGGAAATCCCAAGACACCACCAGAAGATTCGTCACAAGGAAGTGTGTTGTGtagtaacaataacaatattcaCTTAAGTAGCAATATCAATACATCTCACATACTAAACAGTAGCATATCTGGGAATGGTTTAAGTGTTAACGCAAATTTGAACAATGGTATTATTGTACCACCTCCAACAAGCACCTCAATTAGTAGTGGACTTAATTACTTTCGTAATGACGATAGTATTAAGAGCCCTTTTAGGTTTGACGACCCACGAAGTCCATTTCGTTTTTCGGACGAAGGTGGCCCTATGACGCCAAGTGGTGTCATGGTTGGGCGTTTGGGTGAATCTCTAATACCTAAAGGTGACCCAATGGAAGCAAGACTTCAAGAAATGTTAAGGTACAACATGGACAAATACTCGACGCAGAACTTGGATACGTTACATATTTCTCGTCGCGTGCGTGAACTATTGTCAATTAACAATATAGGACAGCGGCTATTCGCCAAATATGTTTTAGGGTTGTCTCAAGGGACAGTGTCCGAGCTTTTATCAAAACCCAAACCATGGGACAAATTGACAGAAAAGGGAAGGGATAGTTACCGCAAGATGCACGCTTGGGCCTGTGACGAAAATGCAGTCCTGCTTCTGAAATCACTCATCCCAAAGAAAGGTAAGCTTAAACTATGTTACTTCTTTACCCTGCCTCAATCTTAA
Protein Sequence
MHHFSRSPETSLAMELAAACHASPLLGVLLFVNTYFTQEESFSVPCLALPLGGRQIEISQLVEDVQRLQASISKLQESSAGKIARLEEQLDHKRQHIARLESRLEAQRDYDDVKRELSILRTIEFPPLGPGGNPAEIPNQSIEMLLLERTKALQQVENAELKSTPTVADVEGSTTTTTTTNSTTSHHMLESHSHSMGHSFENSTAQPPPIPPPSTLPPSIIFPPPLQNVETFGSFLGEEIVANWRRSLERTILSQSHAAAISSSVHHHHHHQQQQQQQQHQQPLQHSHQPIVSLHSPTDPSQTAPSTPNPSTPQQSTSEMENNKIIESSESSRALSSSSTTSSAFATASTPTSLTLVNTTSAISSPLAAPTLTTTTSSAVSGGDISLPLHHHHHHHHHHLMNGNPKTPPEDSSQGSVLCSNNNNIHLSSNINTSHILNSSISGNGLSVNANLNNGIIVPPPTSTSISSGLNYFRNDDSIKSPFRFDDPRSPFRFSDEGGPMTPSGVMVGRLGESLIPKGDPMEARLQEMLRYNMDKYSTQNLDTLHISRRVRELLSINNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDENAVLLLKSLIPKKGKLKLCYFFTLPQS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01449270;
90% Identity
iTF_01448237;
80% Identity
-