Tshe033660.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- jarid2b
- Assembly
- GCA_902151425.1
- Location
- CABFVX010003518.1:72303-83400[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-23 6.9e-19 70.4 0.0 6 89 33 114 29 114 0.94
Sequence Information
- Coding Sequence
- ATGCCCGAGTGTAAAGTAACCGATGACATGAGGTTCACTGCATACAACCAGTATGTTCACAAGATGTTACATCGCTGGGGACCAAATGTTAAAGAAATGATGGCTATCAAGAAGTATTTAGCGACACAGAGTATATCTTTAACTCATCCTCCATGGgtTGGCGGAATGGAGGTTGACCTTCCCCGCTTGTATCAAACAGTTCAAAGTGTTGGGGGCCTCAAAGAGGTAATCGAGAAGAAAAGATGGCAGAGAGTGGCAGACGCGATGAAGATCCCTAAGTCCGCCCAGGACAGGGTCACAAAGTTGGACGacatttattgcaaatatttattgCCGTACGACACGCTATCTCCAGGTGAGAGACAGAAACTGTTTGAGGATGTAGAGAAAGAGTGGGCAGCTCGAGATGTGCAAGTGTTGACTCAAGACAACTCGGGCAGCTCGGACTCCAATGAGGAGGAATTGGACGACATCCAGGATGAAAGTGAGGAGTGCATTGTTAAGGGCCGAAATATGCCGCTGAACGCATTCTACCGCATCGCTCGCAACACTATGAGTATGTGGTTCAGACAGCCAGAGCCACCTGCCACCGAGGTGGAGCAAGAGTTCTGGAAACATGTGATGACACGTCAGTGCCATGTGTGTGTTCATTCTGGATCCATAGATTCCAGCGGGTGGGGCTATGGGTTCCCCTGTTCCAAGAACAGCCCATTCGCCCGACACCCATGGAACCTCAAGGTGCTCACAAACAACAGTGGGTCGGTGCTGCGCTCTATGGGGCCCATCATGGGGGTGACTGTCCCGACCCTACACGTGGGGATGCTGTTCACTACTTGTTGTTGGTACAGAGACCCTCACGGCCTGCCGTGGATTGAGTACCTTCACACTGGAGCCAGCAAGATTTGGTACGGGATTCCCGACGAGTACAGCGGCTCATTCCGCTCAGCACTAGAGAAGTTAGTGCCCCGATATTGCCGAGACCGCACTATCTGGCTGCCTTCGGACACAGCCATGGTTCCTCCTTCTCTGCTGGTAAAGGAGGGCGTGTCCCTGTGTCACACGGTACAGGAACCGGGACAATTCATCTTGGTGTTCCCACGGGCGTTCACCTCGAGCGTTTGTACGGGTTACCTTGTGTCGGAGAGTGTGTACTTTGCCCAGCCCAATTGGCTGACTACGGCGGAACAAGTATTCAAGGACATCCAGGAAAGCTGTGAGTCCTCAATGGTATCTCTAGAGAGGCTTCTATTCAGCATCGCAACAGACGCAAGGTCTCACGTGGAGGTTCTTCGACAGGTGTTGCCAATGGTAGTCAGAATCAGGCAACAGGAGCTGAGTTACCGCCAAGAGCTGTCGACTCTTGGTCTCAAGATGTCAGAACGCCTCCCTTTGCCCGAGGCCAGCGGGAAGCGGCGCAAGTCACGTCCGGCTCGAGATGAAGAAGGAGATTACGAGTGTGAAATCTGCCGAGCTAATCTATTTGTGTCTTTGGTAACAAATTCCCACGAAGAAGGTGTGTATTGTCTTCCTCACGCGATACAACTCCTTACAAATAAGCGGCATCACCTTAAATACTGCAAACTGATGTACACGTACGATGAATCCGAGCTGgatgatttgattaaaaaaataaaagataaaatagaagTGAAAAGCCAGAAGAAGTCACAATCCAGACACGGTTCTTCGAGTCAGAGAATTTGA
- Protein Sequence
- MPECKVTDDMRFTAYNQYVHKMLHRWGPNVKEMMAIKKYLATQSISLTHPPWVGGMEVDLPRLYQTVQSVGGLKEVIEKKRWQRVADAMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPGERQKLFEDVEKEWAARDVQVLTQDNSGSSDSNEEELDDIQDESEECIVKGRNMPLNAFYRIARNTMSMWFRQPEPPATEVEQEFWKHVMTRQCHVCVHSGSIDSSGWGYGFPCSKNSPFARHPWNLKVLTNNSGSVLRSMGPIMGVTVPTLHVGMLFTTCCWYRDPHGLPWIEYLHTGASKIWYGIPDEYSGSFRSALEKLVPRYCRDRTIWLPSDTAMVPPSLLVKEGVSLCHTVQEPGQFILVFPRAFTSSVCTGYLVSESVYFAQPNWLTTAEQVFKDIQESCESSMVSLERLLFSIATDARSHVEVLRQVLPMVVRIRQQELSYRQELSTLGLKMSERLPLPEASGKRRKSRPARDEEGDYECEICRANLFVSLVTNSHEEGVYCLPHAIQLLTNKRHHLKYCKLMYTYDESELDDLIKKIKDKIEVKSQKKSQSRHGSSSQRI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -