Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0034 73 5.3 0.1 8 14 11 17 10 17 0.87

2 11 0.0034 73 5.3 0.1 8 14 28 34 27 34 0.87

3 11 0.0079 1.7e+02 4.1 0.1 8 14 45 51 44 51 0.86

4 11 0.0034 73 5.3 0.1 8 14 62 68 61 68 0.87

5 11 0.0034 73 5.3 0.1 8 14 79 85 78 85 0.87

6 11 0.0034 73 5.3 0.1 8 14 96 102 95 102 0.87

7 11 0.0034 73 5.3 0.1 8 14 113 119 112 119 0.87

8 11 0.0034 73 5.3 0.1 8 14 130 136 129 136 0.87

9 11 0.0033 73 5.3 0.1 8 14 147 153 146 153 0.87

10 11 0.016 3.4e+02 3.2 0.1 8 14 164 170 163 170 0.85

11 11 0.0047 1e+02 4.9 0.1 8 14 181 187 180 187 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0034	73	5.3	0.1	8	14	11	17	10	17	0.87
2	11	0.0034	73	5.3	0.1	8	14	28	34	27	34	0.87
3	11	0.0079	1.7e+02	4.1	0.1	8	14	45	51	44	51	0.86
4	11	0.0034	73	5.3	0.1	8	14	62	68	61	68	0.87
5	11	0.0034	73	5.3	0.1	8	14	79	85	78	85	0.87
6	11	0.0034	73	5.3	0.1	8	14	96	102	95	102	0.87
7	11	0.0034	73	5.3	0.1	8	14	113	119	112	119	0.87
8	11	0.0034	73	5.3	0.1	8	14	130	136	129	136	0.87
9	11	0.0033	73	5.3	0.1	8	14	147	153	146	153	0.87
10	11	0.016	3.4e+02	3.2	0.1	8	14	164	170	163	170	0.85
11	11	0.0047	1e+02	4.9	0.1	8	14	181	187	180	187	0.85

Coding Sequence: ATGATTGGTTGTTTGGTGGAGAGCAGGGCTAGACTTTGTCACGATGGAGATATGATTGGTTGTTTGGTGAAGAGCAGGGCTAGACTTTGTCACGATGGAGATATGATTGGTTGTTTAGTGAAGAGCAGGGCTAGACTATGTCACAATGGAGATATGATTGGTTGTTTAGTGAAGAGCAGGGCTAGACTATGTCACGATGGAGATATGATTGGTTGTTTGGTGAAGAGCAGGGCTAGACTATGTCACGATGGAGATATGATTGGTTGTTTAGTGAAGAGCAGGGCTAGACTATGTCACGATGGAGATATGATTGGTTGTTTGGTGGAGAGCAGGGCTAGACTGTGTCACGATGGAGATATGATTGGTTGTTTGGTGAAGAGCAGGGCTAGACTATGTCACGATGGAGATATGATTGGTTGTTTGGTGGAGAGCAGGGCTAGACCATGTCACGATGGAGATATGATTGGTTGTTTGGTGAAGAGCAGGGCTAGACTATGTCACGGTGGAGATATGATTGGTTGTTTGGTGGAGAGCAGGGCTAGACTGTGTCATGATGGAGAGCAGGGCTAG
Protein Sequence: MIGCLVESRARLCHDGDMIGCLVKSRARLCHDGDMIGCLVKSRARLCHNGDMIGCLVKSRARLCHDGDMIGCLVKSRARLCHDGDMIGCLVKSRARLCHDGDMIGCLVESRARLCHDGDMIGCLVKSRARLCHDGDMIGCLVESRARPCHDGDMIGCLVKSRARLCHGGDMIGCLVESRARLCHDGEQG

Sequence clustering based on sequence similarity using MMseqs2