Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000012.1:31747701-31762680[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 9.7 1.9e+03 1.5 0.2 14 23 86 97 84 97 0.79

2 7 0.0011 0.21 13.9 0.1 1 23 187 210 187 210 0.96

3 7 2.1 4.1e+02 3.5 0.1 3 23 227 249 226 249 0.94

4 7 0.037 7.1 9.1 2.6 1 23 277 299 277 299 0.98

5 7 0.00081 0.16 14.3 0.1 2 23 311 332 310 332 0.97

6 7 0.036 6.9 9.1 2.9 1 23 338 360 338 360 0.97

7 7 0.0011 0.22 13.8 2.6 3 23 368 389 366 389 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	9.7	1.9e+03	1.5	0.2	14	23	86	97	84	97	0.79
2	7	0.0011	0.21	13.9	0.1	1	23	187	210	187	210	0.96
3	7	2.1	4.1e+02	3.5	0.1	3	23	227	249	226	249	0.94
4	7	0.037	7.1	9.1	2.6	1	23	277	299	277	299	0.98
5	7	0.00081	0.16	14.3	0.1	2	23	311	332	310	332	0.97
6	7	0.036	6.9	9.1	2.9	1	23	338	360	338	360	0.97
7	7	0.0011	0.22	13.8	2.6	3	23	368	389	366	389	0.95

Sequence Information

Coding Sequence: ATGGCATATCCAGGCACAGCATCTAGTCCACCATGCCGCCCATATCGGGGCCCACAGGACTACATGACCATGAAGCAAACTTCCATATCCACCCGGGGCAGTTCGGAAAACATTGGCCTTCCTGAGGATGTCACAGAACAGGGAAGTGTGATGCCGCTTCAGATGGAGATGGTGACAGAACAAAGCAGTATCGAAAGTGTCAACTCTCTTCAAGCCCAGTCAGGCCCTGGGACCAGCTCGCCACACCACAAAAAAgTGAAACTTACGAAGCACCAGCGAAAGTCTCCACATGTCCCTGGCAGAGAAAGCGAGTCTCCTTGGAATCCTGGAGTTAAACCTGAAAACTTTGGGAACCCTCAATATAACGCTAGCATGTACAGTATGATGTTTGGCCGACTGCCAATCAAACGCACAGACATGATTTCAGATGAGTCTGAagatgaggatgatgatgaCTATGATAATGTAGAAGGAGAGGGCTACAGCAATCAGTCATCCATGGACGTCAAGTCTCAGCAGAGGGAGCTAGTTGCCGAAAGTAGTGGCCCCAGGTTGGGCTACGAGTGTGGAGAGTGTGACATGGTCGCAGACACTCGACCCAGTCTCAAGAAGCATATAGCCGTCTGCCACCCTTTACTTGCACCTGACTCTGCGTTGATCACCAAGACGTCCAGCGCCTGCCCCATGGCTACATGTCGCTTCCGGACGTCTGAGCGTGACGAGATGGAGGCACATGTGGCTAGACACGTTGCAGAGGGCTACAGTCCCACCGGAAAGAAGCGGTCAGGCCCTATCTCGCTGCAAAGGGTCAGGTATGAAAGAGAAGAATACAGGTGTCAGATATGTGCATATAGCTGTACCATTGAGAAGGCCTTCtacaaacatttgaaaattcACTCTTTGGGCTTGACTGCACCCTCGGTGAAAATATCATGTGTCATCTGCGGTAAAGATCGACCGACTGAGGTGGAAATGAACAAACACATGCGCAAACATCGAGACAACCGCTACTTTTGTTGTGACATTTGTGTGTTTAGGACCGTGCAGTTGAAAAAGTTGATCCAGCACCGGCGCATGCACACTGGAGAGAAGCCCCACTTGTGTCCTCATTGCGCTTACCGCTCAGCACGGCGAGACAACCTGCGCTCACATGTTCGCCGTGTTCACAAAAAGGAGAACCTATACTGCGACACATTTTCGCCACGTGGCGTTCAGTCGCAAGGTGACGAGAATGAGATGCCTGAAAGTCCTGTGGCGAGTCAAGACTGA
Protein Sequence: MAYPGTASSPPCRPYRGPQDYMTMKQTSISTRGSSENIGLPEDVTEQGSVMPLQMEMVTEQSSIESVNSLQAQSGPGTSSPHHKKVKLTKHQRKSPHVPGRESESPWNPGVKPENFGNPQYNASMYSMMFGRLPIKRTDMISDESEDEDDDDYDNVEGEGYSNQSSMDVKSQQRELVAESSGPRLGYECGECDMVADTRPSLKKHIAVCHPLLAPDSALITKTSSACPMATCRFRTSERDEMEAHVARHVAEGYSPTGKKRSGPISLQRVRYEREEYRCQICAYSCTIEKAFYKHLKIHSLGLTAPSVKISCVICGKDRPTEVEMNKHMRKHRDNRYFCCDICVFRTVQLKKLIQHRRMHTGEKPHLCPHCAYRSARRDNLRSHVRRVHKKENLYCDTFSPRGVQSQGDENEMPESPVASQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447067;
90% Identity: iTF_01447067;
80% Identity: -