Basic Information

Insect: Timema podura
Gene Symbol: prdm10
Assembly: GCA_033556935.1
Location: JAVRXN010000007.1:1767953-1791742[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.6 6.9e+02 2.8 0.2 1 10 198 207 198 211 0.82

2 8 1.2e-05 0.0023 20.1 1.3 1 23 524 546 524 546 0.97

3 8 0.0029 0.55 12.6 3.1 1 23 552 576 552 576 0.94

4 8 9.1e-06 0.0018 20.4 6.1 1 23 582 604 582 604 0.98

5 8 0.011 2.2 10.7 0.7 1 23 611 635 611 635 0.95

6 8 0.00019 0.037 16.2 0.1 2 23 643 664 642 664 0.96

7 8 0.00028 0.054 15.7 3.6 1 23 678 700 678 700 0.97

8 8 4e-05 0.0077 18.4 2.7 1 23 706 729 706 729 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.6	6.9e+02	2.8	0.2	1	10	198	207	198	211	0.82
2	8	1.2e-05	0.0023	20.1	1.3	1	23	524	546	524	546	0.97
3	8	0.0029	0.55	12.6	3.1	1	23	552	576	552	576	0.94
4	8	9.1e-06	0.0018	20.4	6.1	1	23	582	604	582	604	0.98
5	8	0.011	2.2	10.7	0.7	1	23	611	635	611	635	0.95
6	8	0.00019	0.037	16.2	0.1	2	23	643	664	642	664	0.96
7	8	0.00028	0.054	15.7	3.6	1	23	678	700	678	700	0.97
8	8	4e-05	0.0077	18.4	2.7	1	23	706	729	706	729	0.95

Sequence Information

Coding Sequence: ATGAACGCAGGGTGTAATGATTGTGAAAGTTGGAACGAAGGCGAGTGTAACCAACACGGCCCTCTTGTTGTGGTACCTGACAGCCCTACACTTACCAAAGCAAGACAGTCACTTCCACTCCTACTTCAATTGAAACGAGACCCCAGCGCAGATCGAGGTGTGTCGGTGTTTGCCAGGAAGCTGGTCTGTCGCCGTACGTTGTTTGGCCCGCTGTTGGCCCCTAGGAAGACCAGTCGCCATATCCCACTCATTCGTGGGAAGTTGGAGTTTAAAGTGTTTCGCAACGCAGGCCTCCCTGTTGCGCTCAACATCCAGACCAGCGACGAGCGACACTGTAACTGGATGGTGTTTGTGCGAGCGGCGCTCACATCTGACCACCAGAACTTGGTGGCCTTTCAGTACCGCGCCGGGATCTACTTTGTTTCTATCAAAGAAATCAAGCCTGGTGAGGAGCTGAGAGTCTGGTACAGCAAGGAATATGCCTTCAACATGGAAACTCGACCACTTGCAAAACCTTCAGATTCGCCTCCACACGAGGAAGGGCTGCCAACCCGAAAACTTCGGCCGAGGTCTCGCCCAGAACAGCAGTCCTATGTATGCCCTATATGTCACCATCGACTGCCTTCATCCTTTCCTCCTCGTGTTGAGACTCGCCAGCAGCGAGCGGTGTGCACCTGCGTGGCCACCGCCACGCCGCCCTATGGCTCAACGCAACCGACCACTCCCGTAACAAAAACTTCTCGGGCTATGGCTGGTCTTGGAGCCAAGTCTGTGCGGAAAAAAAGGACCAAGGAGCAAGTCTTGGATATCTCTGCCATTCCATCGGTAGACACAGGAAGAAGATCTAACAGGGAATCGTTCGCTAAGGTAGGATCACCATCTTCTACCAGTGGGGAAAATACTGCTAATGTGAAAGAATTAATGTTGGCGAGCTCCCGAAAAAACAGTTCAGGAAGTTCGGTCTCCACAACTGTTTCTGAAGTTCATGAGATGTTTCCATCTAATGTTGTTGCGAGTAGTGCCGGTAAGCAGAAGATTATAATGACACCTGATGTTGCCAAGGAAATGCAATCTCAGGTTGAATCTGCTACAACCAGGCCGCATAGTGTTTATAGAGCGCTAACAAGTGATATTTTATTGCCACCGAGTGACATTAGTGAACCTAAGGAGAGCTCTTTGGAGGATGTGGAAGTGTCTTTTTTCAGGCTGGAAACTTCGAGCAGTAATAGTAGTACCAGTGGTAGTAACGGTTCTAGAACTCGGCAGAGCTTAAGGAGAGGTAAAGTTCAACAAGACATTTATAGCAACCCTCAAGCAGGCCCATCGGGTCTGACTCGAAGCCCATATGAGGAATTACCTTATACTGGATCCACACCAACTAGTTCTCGCCACTCTCAACGAAGCTTTCGGACAATGCAAGAAAGAAGGACCGCTAGGACAAAGAAATACACTCAAGATGAGGATATCGTTCAGCGAACAGTGCCAGAAAGGGGTTTTGGATCTAGTCAAGCGGTGGTGGGCCCAGTCACGCCTGGAGCCACCAGCATACCCAGGAAGCCCCGAGGCCGACACACGTGCCCGGTTTGCACCAAGTCCTTTGGTAGTCCAGGTAAACTACGCCAGCACATGTATTCTCATACGGGTGAGCGACCTTTCCACTGCACTTACCCCCAGTGCTCCAAATCATTTTCATCCAAGTTCAAACTAGTCCGCCATGAGCTTATCCACTCAGTGGATCGCAAATTCCGCTGCACCATCTGCGATCGGACCTTCCATCGTAAGGACCACCTAAAGAACCATGTGAAAGTGCACAGTCCCATCAAAAAGACCTTTCGCTGTGATCGGGAGGGCTGTGGGAAGGAGTATAGCTCGTACCTTAGCTTCAGGAAACACTCGGCTGTTCATGCAGCTGAGGAAGGGAACTTAGAATGTAAGATGTGTGGGCGGGCATTTGCCACAAAGGATGAAATTGTCTATCACCTGAAAGTTCATGCTGGTTCAAGAACTGTCAAGAACCCATCAGACAAGAAGTATCGTTGTGAGCACTGTGACAGAAAGTTCTTCACGAGAAAGGATGTCAGAAGACATCTAGTGGTCCATACAGGTAAACGTGACTTCCTCTGTCAATACTGCCCTCAGCGTTTCGGACGAAAAGATCACTTGGTCCGGCATATTAAAAAGAGTCACTATGGGGGTGCTGTTATCAAAGGTAAGGTAAAAAGGCAACAACGTGGGGGCTCTGCTGTTACTTCTAGCACTGTACCTTCTATCTCTGGTGCACCCACACCTAAACGATCATCATCGTCTTCTATTTTAAAATCCTCTGCATCCAAATCCTCAACGTACTCCCCACCAGCGTTTCAACTTCCAGAAGCAAGACCTTCCACTTCGgatgaaatgttgatgtacaATCCTTCAGAGATTATGACTCTCCCTTCTGATCTGACACTGGGTGGGTTATTGGAGGGGACTCAGTATGAGACTGAGAGTGCTGTGGATGTAAAATCAGAGCCCGAAGAACAACATCAGTCATCCACCATCCATCATCGGCCTCAGGTACTTTCACAGGAGTTAGTATCAAGCTTGATGTATGAGcaacctcctcctcctcctcccccctaCTCCTCCCAACTACAACAGACCCCTTTCAAACTGTTTGAGCCTGAAGATAACGAAGGAGAGATAAAAATGGAACCACAGTATCCGCCGGAGCGGGGAAGTATGCCACACCCCATGCTGCCAACCTCTGTCGGCGGCATGGACTTGAACCAGTTCCTAAGTCTCCTTCCCTCAACGTCTGGCTCGGTAGACCATGATCCGTCGGCCGCGAATCTGCTAGTCCAACATTTGAGACGAGGAGAGGAGGAGTTGCAACGGTTCCTTGTGAGTGGATCTGACGGGGGTAACCTGCTGGCGGGTGACACGGGTTTGCAATCACACTTGTTGAACCTTATAAGCTCCACGGAGAGCTTGCAGTTGCCAGGATCGGAGCCATCCGGTAGCGCTGGCGGCGTATCTATGGAATCCGTGACCACCCCTAGTGGGGATGAGCCAGATCAGTCGCAGATCATAGCTTCTCTCCTTCAGTCTAGTGAGGAGGTGGATCCTAACTCGACTCCTCTGCCTGGTTTCAGTCAAGCGTTTCCTCAGTAA
Protein Sequence: MNAGCNDCESWNEGECNQHGPLVVVPDSPTLTKARQSLPLLLQLKRDPSADRGVSVFARKLVCRRTLFGPLLAPRKTSRHIPLIRGKLEFKVFRNAGLPVALNIQTSDERHCNWMVFVRAALTSDHQNLVAFQYRAGIYFVSIKEIKPGEELRVWYSKEYAFNMETRPLAKPSDSPPHEEGLPTRKLRPRSRPEQQSYVCPICHHRLPSSFPPRVETRQQRAVCTCVATATPPYGSTQPTTPVTKTSRAMAGLGAKSVRKKRTKEQVLDISAIPSVDTGRRSNRESFAKVGSPSSTSGENTANVKELMLASSRKNSSGSSVSTTVSEVHEMFPSNVVASSAGKQKIIMTPDVAKEMQSQVESATTRPHSVYRALTSDILLPPSDISEPKESSLEDVEVSFFRLETSSSNSSTSGSNGSRTRQSLRRGKVQQDIYSNPQAGPSGLTRSPYEELPYTGSTPTSSRHSQRSFRTMQERRTARTKKYTQDEDIVQRTVPERGFGSSQAVVGPVTPGATSIPRKPRGRHTCPVCTKSFGSPGKLRQHMYSHTGERPFHCTYPQCSKSFSSKFKLVRHELIHSVDRKFRCTICDRTFHRKDHLKNHVKVHSPIKKTFRCDREGCGKEYSSYLSFRKHSAVHAAEEGNLECKMCGRAFATKDEIVYHLKVHAGSRTVKNPSDKKYRCEHCDRKFFTRKDVRRHLVVHTGKRDFLCQYCPQRFGRKDHLVRHIKKSHYGGAVIKGKVKRQQRGGSAVTSSTVPSISGAPTPKRSSSSSILKSSASKSSTYSPPAFQLPEARPSTSDEMLMYNPSEIMTLPSDLTLGGLLEGTQYETESAVDVKSEPEEQHQSSTIHHRPQVLSQELVSSLMYEQPPPPPPPYSSQLQQTPFKLFEPEDNEGEIKMEPQYPPERGSMPHPMLPTSVGGMDLNQFLSLLPSTSGSVDHDPSAANLLVQHLRRGEEELQRFLVSGSDGGNLLAGDTGLQSHLLNLISSTESLQLPGSEPSGSAGGVSMESVTTPSGDEPDQSQIIASLLQSSEEVDPNSTPLPGFSQAFPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447907;
90% Identity: iTF_01447907; iTF_01445140; iTF_01448951; iTF_01445987; iTF_01446971;
80% Identity: -