Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000013.1:1500037-1503803[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.57 1.1e+02 5.3 0.0 2 23 31 53 30 53 0.88

2 14 8 1.6e+03 1.7 0.2 3 12 194 203 193 210 0.79

3 14 0.037 7.2 9.1 0.1 3 23 223 244 221 244 0.91

4 14 7.5 1.5e+03 1.8 0.3 3 9 264 270 262 270 0.88

5 14 0.00011 0.021 17.1 0.3 1 23 283 305 283 305 0.97

6 14 0.16 31 7.1 0.3 3 20 324 340 323 342 0.92

7 14 0.089 17 7.9 0.3 3 23 354 375 353 375 0.93

8 14 0.00059 0.11 14.7 5.2 1 23 381 403 381 403 0.98

9 14 0.00086 0.17 14.2 5.1 1 23 409 431 409 431 0.96

10 14 5.3e-05 0.01 18.0 1.3 1 23 439 461 439 461 0.97

11 14 0.00073 0.14 14.4 0.3 1 23 467 489 467 489 0.97

12 14 0.026 5 9.6 4.7 1 23 495 517 495 517 0.87

13 14 0.045 8.7 8.8 8.1 1 23 521 543 521 543 0.98

14 14 0.00088 0.17 14.2 0.6 1 21 547 567 547 568 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.57	1.1e+02	5.3	0.0	2	23	31	53	30	53	0.88
2	14	8	1.6e+03	1.7	0.2	3	12	194	203	193	210	0.79
3	14	0.037	7.2	9.1	0.1	3	23	223	244	221	244	0.91
4	14	7.5	1.5e+03	1.8	0.3	3	9	264	270	262	270	0.88
5	14	0.00011	0.021	17.1	0.3	1	23	283	305	283	305	0.97
6	14	0.16	31	7.1	0.3	3	20	324	340	323	342	0.92
7	14	0.089	17	7.9	0.3	3	23	354	375	353	375	0.93
8	14	0.00059	0.11	14.7	5.2	1	23	381	403	381	403	0.98
9	14	0.00086	0.17	14.2	5.1	1	23	409	431	409	431	0.96
10	14	5.3e-05	0.01	18.0	1.3	1	23	439	461	439	461	0.97
11	14	0.00073	0.14	14.4	0.3	1	23	467	489	467	489	0.97
12	14	0.026	5	9.6	4.7	1	23	495	517	495	517	0.87
13	14	0.045	8.7	8.8	8.1	1	23	521	543	521	543	0.98
14	14	0.00088	0.17	14.2	0.6	1	21	547	567	547	568	0.95

Sequence Information

Coding Sequence: ATGAATGTGGGTCAATCTCCCCTCGACCAATGGTCATGGAAGCTACGCCTGGTACCTGCGTTCCTCAACAATGTCAGGAACCCGCACTTAAAATGTCCGGTGTGTGGGGAACTGTTGATCGGGCTGGAGAAGCTCGCCCAACACCTCGACAACCGTCACTGTGAGACTGGTGACCAGACATCGACAACGAGCAAGGGGATCTATGACAATGAAGCGTTGGAGAAGAGTTCTGACTCGATTAGTTTACACAGCGCAGCCAGTTCGATAGGGCATAGCTTACCAACTAGTATTAAATTAGAAGAAGATGACATAAACGACACTCCGCAAGGTGTAAACAGTTCTATTCATAAATTCAATAACTTGCAAGAGCACGCAACAAACTCTCATAACATGAACAATATTGTTGTAAATGTTCCGAAAGAGCTGTTTCCTGAAGTGCTGCCGTCTAGCAAAAGGAAAGTGGTAAAAATTCACGGACAAACGATAACACTACAACCAGATTTATTGTCGGACTCTGGCATAAAACAAACCTTGCCTGATGATCAAGCGTCTGACAAGAATAAAACTCCGGAAAAGATGTGTCATATTTGTGGTGGGACATCCCGTCGCAACTTTCCGTCCAAGCGGCAGATGTACGTGGACAAAGAGTCGGACCAGAGGGTGATATGTAGCGTGTGTGTAGCTTGTTTCGAAGACGAGGACCTCTTGGCTAGGCACGTTTTATTCGCGCACAACATTTCCCGCCACATGAAAAGTTCTCACGGCATAGACGGGGCAGTCCGCTCAATTTGTCAAGATTGTGGCAAAGTTAACTGCTCTGAAACACTACACAAGACTAATTTAAGTTATACATGCAAGGTATGTGGTGAAAACTTTTCGACTGTAGTCGCCCTGCGTTCACACTCGTCCTCTCATTTGGAAATCTCAAACAAGAATGAAGTCTTCAAAACATCGCAAGAATCTGTCGCTTGTCCAGACTGCGACGAGATATGTAGCAAGAACAAGTTGAAGGCTCACAGGGCAGAGTGTCCCAAGAAAGAATCTGACGAAGCTGTGGCATGTCCAGACTGCGGTAAGATGTGGGGCAATAAAAAGAAGATGAAACTACACAGAGATCGTGTCCACCTCCGGATATTGCGTTTTGTTTGCCATGAGTGCGGTAAGAAATTCTTCTGTAAGAGCGGACTCAACACACATCTGCTGACGCACTCAAAGGTGAAGAAACACGAGTGCAAGTTTTGCAGCAAACGTTTCTCTTCGAAAACCAACTTGGACACCCACGAGTCTAAACACTTGGGCAAGAAGGAGAGTCCATTTATTTGTAGCTATTGTGGGCGCTTGTTCACTAACAAGCTATATCTACAGAACCATGAACGGCTCCATAAGGGTGAGCGTCCTTACGCCTGCAAGATCTGCGGTGCCAAGTTTGCCGGGCTATCAACTCTGTACAGTCACAAGTACACGCACACGGACGAAAGGCCGCATCACTGTAACATGTGCGGGAAATCGTTCAAGACGACGGCTGCATTGTACTTCCACAAGCAGCAGCATTCGAAACAACACAAGTGTGACGTGTGTTGCCGAATGTTCAGCTATATGCACAACTTGAAGCAGCATTTACTAACTCATACTAAAGACTACAGTTGCTCAGGGTGCGGCGCGCAGTTcaagtcattaaaaaaattgcaagttCATGAAAGACATGGATGTAGGCCTGGTTAG
Protein Sequence: MNVGQSPLDQWSWKLRLVPAFLNNVRNPHLKCPVCGELLIGLEKLAQHLDNRHCETGDQTSTTSKGIYDNEALEKSSDSISLHSAASSIGHSLPTSIKLEEDDINDTPQGVNSSIHKFNNLQEHATNSHNMNNIVVNVPKELFPEVLPSSKRKVVKIHGQTITLQPDLLSDSGIKQTLPDDQASDKNKTPEKMCHICGGTSRRNFPSKRQMYVDKESDQRVICSVCVACFEDEDLLARHVLFAHNISRHMKSSHGIDGAVRSICQDCGKVNCSETLHKTNLSYTCKVCGENFSTVVALRSHSSSHLEISNKNEVFKTSQESVACPDCDEICSKNKLKAHRAECPKKESDEAVACPDCGKMWGNKKKMKLHRDRVHLRILRFVCHECGKKFFCKSGLNTHLLTHSKVKKHECKFCSKRFSSKTNLDTHESKHLGKKESPFICSYCGRLFTNKLYLQNHERLHKGERPYACKICGAKFAGLSTLYSHKYTHTDERPHHCNMCGKSFKTTAALYFHKQQHSKQHKCDVCCRMFSYMHNLKQHLLTHTKDYSCSGCGAQFKSLKKLQVHERHGCRPG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -