Basic Information

Insect: Timema podura
Gene Symbol: L
Assembly: GCA_033556935.1
Location: JAVRXN010000006.1:2979406-2987412[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.053 10 8.6 0.2 3 23 25 45 24 45 0.98

2 19 0.0035 0.68 12.3 0.6 2 23 82 103 81 103 0.95

3 19 0.017 3.3 10.1 0.2 3 23 113 134 111 134 0.93

4 19 2.3 4.4e+02 3.4 2.4 1 23 238 260 238 260 0.94

5 19 0.084 16 7.9 5.3 1 23 264 286 264 287 0.95

6 19 0.11 22 7.5 2.0 3 23 362 384 361 385 0.93

7 19 0.0037 0.72 12.2 4.6 2 23 402 423 401 423 0.96

8 19 0.61 1.2e+02 5.2 0.5 1 23 433 455 433 455 0.94

9 19 3.5 6.8e+02 2.8 0.6 2 23 463 484 462 484 0.95

10 19 4.9 9.4e+02 2.4 0.1 1 13 533 545 533 549 0.87

11 19 2.8e-05 0.0054 18.9 0.1 1 23 581 604 581 604 0.97

12 19 0.19 37 6.8 0.2 1 23 608 630 608 630 0.97

13 19 0.19 36 6.9 1.4 1 23 638 660 638 660 0.96

14 19 0.0033 0.64 12.4 0.2 1 23 668 690 668 690 0.98

15 19 1.4 2.7e+02 4.1 1.7 1 23 697 719 697 719 0.94

16 19 4.1e-06 0.0008 21.5 1.0 1 23 789 811 789 811 0.98

17 19 1.7e-05 0.0033 19.6 0.4 3 23 819 839 818 840 0.94

18 19 3e-05 0.0058 18.8 0.2 1 23 865 888 865 888 0.95

19 19 2.9 5.5e+02 3.1 2.9 2 20 890 908 889 912 0.73

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.053	10	8.6	0.2	3	23	25	45	24	45	0.98
2	19	0.0035	0.68	12.3	0.6	2	23	82	103	81	103	0.95
3	19	0.017	3.3	10.1	0.2	3	23	113	134	111	134	0.93
4	19	2.3	4.4e+02	3.4	2.4	1	23	238	260	238	260	0.94
5	19	0.084	16	7.9	5.3	1	23	264	286	264	287	0.95
6	19	0.11	22	7.5	2.0	3	23	362	384	361	385	0.93
7	19	0.0037	0.72	12.2	4.6	2	23	402	423	401	423	0.96
8	19	0.61	1.2e+02	5.2	0.5	1	23	433	455	433	455	0.94
9	19	3.5	6.8e+02	2.8	0.6	2	23	463	484	462	484	0.95
10	19	4.9	9.4e+02	2.4	0.1	1	13	533	545	533	549	0.87
11	19	2.8e-05	0.0054	18.9	0.1	1	23	581	604	581	604	0.97
12	19	0.19	37	6.8	0.2	1	23	608	630	608	630	0.97
13	19	0.19	36	6.9	1.4	1	23	638	660	638	660	0.96
14	19	0.0033	0.64	12.4	0.2	1	23	668	690	668	690	0.98
15	19	1.4	2.7e+02	4.1	1.7	1	23	697	719	697	719	0.94
16	19	4.1e-06	0.0008	21.5	1.0	1	23	789	811	789	811	0.98
17	19	1.7e-05	0.0033	19.6	0.4	3	23	819	839	818	840	0.94
18	19	3e-05	0.0058	18.8	0.2	1	23	865	888	865	888	0.95
19	19	2.9	5.5e+02	3.1	2.9	2	20	890	908	889	912	0.73

Sequence Information

Coding Sequence: ATGTTCCCCTCAGTATCAATTCTGATCTGCCCCTGTCAGATGAATCAATACGACCAGCCGGGCACCCTCCTATGCAACCAATGTGGTGCGGCCTTACCAGACTTCGAGTCGTTCCGCACCCATCTCAAGTCTCACCTGGAGGAGGCGGGAGGGCTTCGGGGTTTACTTGGGGGTGGTGGCACGGACCTGCTGGCTATGCTCGCCGCCTCCTCCTCGGAACAGCGTGTCAAGAGCCCCGCCCTGCCCTGTCCCCACTGTGGCGCCAAGTTCTCCAGCCCAGAGGACCATCAACAGCACCTCGCCAGTCACTTCTTGGCCACGGCGACTGAGTACGGTTGTCAGAGCTGCCTCAAGCTCTTCTCCAAGCCTGACGAGCTGCAGAAACACCTCATGGATATCCACGCGCACCATCTTACCGCTGTTCCCTGTGCAAGGAGATGTTCGACTCCAAGGTGGCCATACAGGCTATACTTGAATGTAAAGGCTTTATATTCTTCTCAAGAAAACTATTGTTTCTCTTTATCAGGTCCATTCGCGGTAAAGCACAGCAACGAATGCAAGCTGTACCGCTGCACAGCCTGCCCATTATCCTCAGCAGGTCTTCCGTTCGGAGATGGACTTCGTCTTCATGTCCGGACAATCCACCACCACCCCCCGCCGCCCCTTCCTCTGTCGCCGACCAAACTTCCCGCCTCCGTATCTCAGCAGCAGTTCCGCTGCTTGTTCTGCCGCCTCAGCTTCCCGACTGAGCACGATATGCAGTTCCACTTGACGGTGCACTCCAAGCAGTTCCACTGTCCTTTCTGTCAAGAGGGCTTTCATGTGGAGTTCTTGTTGGACAAACACATGCAGACTCATCATACCACGCAGGTCCTGAGCAGCAGCTCATCGAATGGCGTGGACAACCCGAGTCAACAGAAATCCCCCAAGAGCAAACCTTCAAGTGGCGGCAACCCTTCAAACTCCATGGTGACTATTGGAAATAACAATTCTTCTCTCAACATTAACAACAACAACTCCTCGAGAGGCTCCAGCTCAGACAATGGGGTCGCTTCCAAGATACCTGAAAGCGCCAAGAACTGCTGTGACATCTGTGACCGGCGTGACTTTGCCAGCGAGTCCGAGCTGACAGCGCACCGGAAGCTGGTCCACCACGTGAAAACCGCCGGCGCTGGTGGGGGTAAGAATGGTGCCGTCAGTCTCCACTGCGCCTACTGCAGTGAGAACTGCAAGTCCAGGACAGAACTGGAGAACCATATGAAGACTCACTCCCAGGGCAGTGGAGGTTCGGGGAAACACAAGTGCAACATCTGCGATGAGCTGTGTCCGTCGGCGGCCATCTTGGCTGAGCACAAGTTGACGCACTGCAAGGTGGTCTCTGGGAGCGTCTGCACACAATGCAAGTCCAATCTCGTCAGCGAGGAGCAGTTCTACTCGCACCTGCAGCAGCACGGAGGGGGTGGGGCAAACAACTCTACCAACAGCCCTCAACAGGTTGCCTTACCGACGCCATGCGTCGTCTGCAGACAGACGTTGATATCCGACATTGAGGTCCGCATGCACGCCCGGTTTCACCTGAAGAACTCCGAGCCGACCTACCAGTGCTTCCTGTGCCTGAAACAGTTCGAGTCCCAAAACCTGGTGGTGGCCAACGGAGGCCACCAGGCAGCCACCTACGTGTGCAAGGAGTGCTACCACTGCCACAGTAAGACGTCGCCGTCCCCAAGCCAGGAGCAGGCGTTCAGATGTCCAGAGTGCCAGGTCAAGTTCGAGACGAGCTCTGCGCTGGAGGCTCATCTAGTGACCGTCCATAAGAAAACCTACCAGTGCATCAAGTGCCAGATAAGTTTCGAGACTGAACGCGAGATCCAACTTCACGTGGCTACCCACCTGCTGACTGAGGGCAGCAGCCACGAGTGCCACCTTTGTCGCCGCCTGCTGTCCACACCACTTAAGTTGCAGGCCCACCTCATAGAACACACCTTCGCGGGCTGCGGCAGCTACACCTGCTACCTGTGCAGCGCGGTCTTCACGGCGTCCCAAGGCCTGCAGCAGCACATGCTAGAGCATGGCCTGGCGGCCAGGCCTTACGACTGCTCCAGGTGTAGCCTGCGGTTCTTCTTTAGAGCGGAGCTGGACAACCACAGCTACAGCCACCTGGAGGAGGCTATGGTTGGAGGTTCCGGGGCGCTAATAGATGGAGGCGACCTGGCTACCAAGGCTGCGTTTTACCATCATCTGACCACAAACGGCTCCTACGACCCCTCGCCCGATCTACAGTACTACAAGACCTTGAGTCAAGACCCGGTCCAGCAGAAACCACACCGACCCAAGGGGGGCAAATCGGGCCCTAAAGGGGGCACGTTCAGGTGCTCGGAATGTGGGAAGGAGTTCAGTAGCGCCCTGGGTCTGCAGGCGCATCAGCGCCACCACAACAAGCACTCAAGGAGGTCGTGCGTGGAGTGCGGTAAGGAGTTCAGCTCCGCCAGGAACCTTGGGGTACACATGAGGGCCCACCACCCCGGAGAGCACAGTTCTGATGACAGGACGACATCTGACGAGAGACTTGATGGCGTGAAGCAGGAGAGAGGTCACCCCTGCACCATCTGTCAGAAGGAATTCTCGGACGCCGACTCGTTGGAGGTCCACGTCTTGTCCCAGCATTCCCGGTGCCCGCATTGCGGTGAGGCGTTCCTTCACCAGACTCTCTGCGTCCAACACATCGCGCATGCGCACCCAGAGAGTGTCGCGATCAAGCAGGAACCGGCGGTGATAAAACAGGAGGATGAGGAGGATCTCGACGTGGCGTCCTTGTCGGCTCCCACCGCCGTGGAGGAGCACTACGGCCCGGGTCTGGACGAGGTGCCGGTGGATGTTGTGGGGGACGCCTCGCCCTTCGATGAAGACACGCGTAAGGACGACTCGTCGACGAATCAGAGTGAGGTGAACAATTCCGTCACTTCCTGTGAAGACAGTGATGACGTGGACAAGCGACAAGGAGAGGACAACCACAGCAGTGGAGCCTTCCTTGCGATAGTCCAGTCTCCTGCGAGGTTGGGCTCGTCACTGAAACAGAGGAGAGGACAACCACAGCAGTGGAGCCTTACTTGCGATAGTCCACAGTCTCCTGTGAGGTTGGGCTCGTTACTGAAACTCAGGAGAGGACAACCACAGCAGTGGAGCCTTCCTTGCGATAGTCCAGTCTCCTACGAGGTTGGGCTCGTCACTGAAACAGAGGAGAGGACAACCACAGCAGTGGAGCCTTCCTTGCGATAG
Protein Sequence: MFPSVSILICPCQMNQYDQPGTLLCNQCGAALPDFESFRTHLKSHLEEAGGLRGLLGGGGTDLLAMLAASSSEQRVKSPALPCPHCGAKFSSPEDHQQHLASHFLATATEYGCQSCLKLFSKPDELQKHLMDIHAHHLTAVPCARRCSTPRWPYRLYLNVKALYSSQENYCFSLSGPFAVKHSNECKLYRCTACPLSSAGLPFGDGLRLHVRTIHHHPPPPLPLSPTKLPASVSQQQFRCLFCRLSFPTEHDMQFHLTVHSKQFHCPFCQEGFHVEFLLDKHMQTHHTTQVLSSSSSNGVDNPSQQKSPKSKPSSGGNPSNSMVTIGNNNSSLNINNNNSSRGSSSDNGVASKIPESAKNCCDICDRRDFASESELTAHRKLVHHVKTAGAGGGKNGAVSLHCAYCSENCKSRTELENHMKTHSQGSGGSGKHKCNICDELCPSAAILAEHKLTHCKVVSGSVCTQCKSNLVSEEQFYSHLQQHGGGGANNSTNSPQQVALPTPCVVCRQTLISDIEVRMHARFHLKNSEPTYQCFLCLKQFESQNLVVANGGHQAATYVCKECYHCHSKTSPSPSQEQAFRCPECQVKFETSSALEAHLVTVHKKTYQCIKCQISFETEREIQLHVATHLLTEGSSHECHLCRRLLSTPLKLQAHLIEHTFAGCGSYTCYLCSAVFTASQGLQQHMLEHGLAARPYDCSRCSLRFFFRAELDNHSYSHLEEAMVGGSGALIDGGDLATKAAFYHHLTTNGSYDPSPDLQYYKTLSQDPVQQKPHRPKGGKSGPKGGTFRCSECGKEFSSALGLQAHQRHHNKHSRRSCVECGKEFSSARNLGVHMRAHHPGEHSSDDRTTSDERLDGVKQERGHPCTICQKEFSDADSLEVHVLSQHSRCPHCGEAFLHQTLCVQHIAHAHPESVAIKQEPAVIKQEDEEDLDVASLSAPTAVEEHYGPGLDEVPVDVVGDASPFDEDTRKDDSSTNQSEVNNSVTSCEDSDDVDKRQGEDNHSSGAFLAIVQSPARLGSSLKQRRGQPQQWSLTCDSPQSPVRLGSLLKLRRGQPQQWSLPCDSPVSYEVGLVTETEERTTTAVEPSLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446962;
90% Identity: -
80% Identity: -