Tpod027120.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema podura
Gene Symbol
-
Assembly
GCA_033556935.1
Location
JAVRXN010000008.1:2170706-2185178[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00012 0.023 16.9 0.7 1 23 486 508 486 508 0.96
2 12 0.013 2.6 10.5 0.9 2 20 525 543 524 545 0.91
3 12 0.083 16 8.0 0.4 1 10 554 563 554 576 0.88
4 12 0.0088 1.7 11.0 3.7 3 23 584 605 583 605 0.95
5 12 0.00035 0.068 15.4 9.6 1 23 611 633 611 633 0.98
6 12 0.01 2 10.8 0.3 2 23 670 691 669 691 0.96
7 12 0.32 63 6.1 4.8 1 23 697 719 697 719 0.99
8 12 2.6e-05 0.0051 19.0 0.6 1 23 725 747 725 747 0.95
9 12 0.08 16 8.0 1.5 3 23 755 775 753 775 0.96
10 12 0.021 4 9.9 2.2 1 23 781 803 781 803 0.96
11 12 9.2e-07 0.00018 23.6 1.2 1 23 809 831 809 831 0.98
12 12 9.1e-05 0.018 17.3 0.5 3 23 839 859 838 859 0.95

Sequence Information

Coding Sequence
ATGGATGAGTCGGTCGACACTGTCAAGATGGTGTTGAAAAGTGACACCGGGGACTCTGTAACTGTCTGTATGTACCCAGACAACGCTTTCGAAGAGTTCAGCAACAAGTTCCATAACCATCTTGACCTACCGTTGGATTGCCAGTTGAAAGTGGAAGACAACCATTTCTTGACAAAAGAAAAAGATTCGGAACTGTTGTTTGGTGATCTTGGATTGATTTCCTCCGTGAGTGATGTCACGGACGTTACATTTGTGAGCACAGACCCTGAGACACTCTCTATCACAAGTGATAACAACTTTGTCATGTCACCAGTCCAGCAGTCGGTGTACCCCCAGGATGTCAGGAGCTGCATGAAACCAGAGGTGTCTTATGACTCGTGTTCACCTGTATGGAGCAAAGTGGTCTCGTTTAGATGTGCGGTCCCAACTTGTGTCAATACCAAGGACACCTGGCCCAGGAAGAAGTTTTTCAAGTTCCCCATCGCCAAAGATAGgTGTCATCAGTGGCTGCAGCTTTGCCGGCGGGAGGATCTTCTAGAGGAGCCGAGTGAAATGGTCGGCAGCCTCTATGTTGTGTGTTCAGATCACTTCATTCAAGACCACTTTGTGACGGTGGCTCGTAAAGCTCTGACCAAAATGGCAGTGCCGACAATATTTCCTGCTCCTGACGATATACTGACAAAACAGAGAGTTAACGGGACTGCAGAAATCATATTTGGAGAGGGTAGCAGCAGTTCCGACTCTGAGAGGGATGTAGACTCCCCCGGTCAGTTGTGCAGACTTTGTGGGTGTGTCTCTGAGGATGCAGCATACATCTACGGCAGCACCGAGGAGGATTTGGGGCTCGCGACCAAGATCAACACCTTGCTGCCAATCATTGTTGAGAAGAGCGACCCACTTCCCAAGCAGGTATGCATGAACTGCCTCTCTAAATTGGAGACCTGCTTTGAGCTGACTAAATCATGTCTCAGGACAGACCGATGGTTGAATCGTTTGAAGAGGAAGAATCTCTTCAGAAAGTACGATGAAATTAACTTTAACAATAGCGCCATTGAAAAGTTGGTTACAAGTTGCTATTCTTGTCCGTTTTGCTCAGATGGTACCATGATCATGCAAAAAACCTCGTCTCATGATTCAACTCTAGTATGCGGAGACATAAAAACGACAGAGCAAAGTATTAACTCTTGCGCCTTGCCAAACGATAAATCCGCAAAACAAATGTTGAACGATGAGTCCGTTTCCACGAGTGATACAGAAATACATCCTGAGCTACCGAATGTATTTTACGAGGTCAGAGATGAACACGGAATAAATATGCGATGGTTGAGCCGACGCCAAGTTGGTGGAATGAGGATGGTGAAAGTGTTGACCGACATCGCTGCCTCCTCTGTGGCACTAGTTTCCAGACTCTGGAATGTGTCTGGAGCACAGCAACTCTCATCCAGACACGAAGGTTTTGTTTGTAACGTGTGTCTTCTTCACTTTTCAAACAAATCTGAACTCGCCAGTCACATGGAAGATCATAGAGCAGACGAGAAACGACTCTTCAGAGTGGAAGGCTCTAAACGCCTCATTTGCACTGTCTGCGGCAGGAAGTTCAATAACGAGAGGACATGGAAGGCCCACTCTTGTTCCGTTAGTGAACCTTCAAAAAAACTGTTCAAGTGCACAGAGTGTAACAAATCTTTCCTCACTGAGGAACGCCTCACGTTCCACGGGATCTTGCACAAACTCAAGCAGCCCAACCACTGTGAGAAGTGTGACAGGCAATTTGAGCACAGGAGCGCTTTCTACCAACACTGGCGGCTTGTCCACGAAGGTGAACGGCCGTTTTGCTGCCATAAATGTGGCAAAACATTCTACTCTCACTCGAGGCTTGTCACACACCTGCGCACCCACTCAGACACTCTACGAAGCGAGGGCACACAGGAAAAGTCACACAACAGTGTCGAGTGTTTCAGAGGAGTCCGGCGGGAACATGAAGGAAGGGGACAAGTGCGCTCATTGGTGTGTGAAGAGTGCGGGGCCCAGTGTGTAGGAAGTAGGAAGCTGAAGGCACATTTGAAGCTACACAGGGCGGAGACAGTCTACCAGTGCGGAATGTGCTGCCGGAACTTCCCCAACCACCGGCGGCTGGTCCTGCACCAACGCATGCACTCCGGAGAAAAGCCGTACCCTTGTCCAGCTTGTGGTAAGAGGTTCTCTCAGTCATCAGCGCTTCACACACATTCGTTACTTCACACTGGAGAGAAACCCCATTTATGTGACCTGTGTGACGCTACCTTCAGGATCAAGGCGGACAGAGACAACCACCGGCGCACGCACACCGGAGAGCGGCCTTACCGCTGCGAGTACTGCTCCAAACAGTTCCGGACCGGCCAGGTGTATTACCAACACCGCATGATCCACACGGGGGAGCGGCGTTTCCCTTGCAATGTGTGTGGCAAGGCGTTCAAACGTTCCCACACACTCGTGGTCCACAAGCGTATCCATACAGGAGAAAAGCCCAATATTTGCGACGTCTGCGGCAAAGGTTTCCGCCAACGAACGGATATGAGGAAACACAGGGCTCTCCATGGCTCTTGA
Protein Sequence
MDESVDTVKMVLKSDTGDSVTVCMYPDNAFEEFSNKFHNHLDLPLDCQLKVEDNHFLTKEKDSELLFGDLGLISSVSDVTDVTFVSTDPETLSITSDNNFVMSPVQQSVYPQDVRSCMKPEVSYDSCSPVWSKVVSFRCAVPTCVNTKDTWPRKKFFKFPIAKDRCHQWLQLCRREDLLEEPSEMVGSLYVVCSDHFIQDHFVTVARKALTKMAVPTIFPAPDDILTKQRVNGTAEIIFGEGSSSSDSERDVDSPGQLCRLCGCVSEDAAYIYGSTEEDLGLATKINTLLPIIVEKSDPLPKQVCMNCLSKLETCFELTKSCLRTDRWLNRLKRKNLFRKYDEINFNNSAIEKLVTSCYSCPFCSDGTMIMQKTSSHDSTLVCGDIKTTEQSINSCALPNDKSAKQMLNDESVSTSDTEIHPELPNVFYEVRDEHGINMRWLSRRQVGGMRMVKVLTDIAASSVALVSRLWNVSGAQQLSSRHEGFVCNVCLLHFSNKSELASHMEDHRADEKRLFRVEGSKRLICTVCGRKFNNERTWKAHSCSVSEPSKKLFKCTECNKSFLTEERLTFHGILHKLKQPNHCEKCDRQFEHRSAFYQHWRLVHEGERPFCCHKCGKTFYSHSRLVTHLRTHSDTLRSEGTQEKSHNSVECFRGVRREHEGRGQVRSLVCEECGAQCVGSRKLKAHLKLHRAETVYQCGMCCRNFPNHRRLVLHQRMHSGEKPYPCPACGKRFSQSSALHTHSLLHTGEKPHLCDLCDATFRIKADRDNHRRTHTGERPYRCEYCSKQFRTGQVYYQHRMIHTGERRFPCNVCGKAFKRSHTLVVHKRIHTGEKPNICDVCGKGFRQRTDMRKHRALHGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01449674;
90% Identity
iTF_01449674;
80% Identity
iTF_01449674;