Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000012.1:58824376-58828690[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.045 8.7 8.8 0.0 2 23 168 189 167 189 0.95

2 11 3.5e-05 0.0068 18.6 0.8 1 23 195 217 195 217 0.97

3 11 0.0041 0.79 12.1 6.2 1 23 223 245 223 245 0.98

4 11 1e-06 0.0002 23.4 2.7 1 23 251 273 251 273 0.98

5 11 0.11 21 7.6 2.7 1 23 288 311 288 311 0.94

6 11 1.1e-05 0.0022 20.1 3.7 1 23 317 339 317 339 0.99

7 11 0.0013 0.24 13.7 2.1 1 19 345 363 345 367 0.95

8 11 0.032 6.2 9.3 6.2 1 23 373 395 373 395 0.97

9 11 3.1e-06 0.0006 21.9 0.2 1 23 401 423 401 423 0.96

10 11 0.00015 0.028 16.6 2.5 1 23 429 451 429 451 0.98

11 11 0.00035 0.068 15.4 5.3 1 23 458 480 458 481 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.045	8.7	8.8	0.0	2	23	168	189	167	189	0.95
2	11	3.5e-05	0.0068	18.6	0.8	1	23	195	217	195	217	0.97
3	11	0.0041	0.79	12.1	6.2	1	23	223	245	223	245	0.98
4	11	1e-06	0.0002	23.4	2.7	1	23	251	273	251	273	0.98
5	11	0.11	21	7.6	2.7	1	23	288	311	288	311	0.94
6	11	1.1e-05	0.0022	20.1	3.7	1	23	317	339	317	339	0.99
7	11	0.0013	0.24	13.7	2.1	1	19	345	363	345	367	0.95
8	11	0.032	6.2	9.3	6.2	1	23	373	395	373	395	0.97
9	11	3.1e-06	0.0006	21.9	0.2	1	23	401	423	401	423	0.96
10	11	0.00015	0.028	16.6	2.5	1	23	429	451	429	451	0.98
11	11	0.00035	0.068	15.4	5.3	1	23	458	480	458	481	0.95

Sequence Information

Coding Sequence: ATGGAACCAGCTCCTTACGCCGGAATAGTTCCTGTCACGGATATCAGCTCAGACCTGTTTCCTGCAGAGATAGAAATTAAAGAGGCCGCCTGTGAGAGTGTGTTTTGTTGGTCGGAACATTGCGACAACTGTCGAGCTACTAAGGAAATGTTTGTGGTGATCAAGGACCTAAGTTACACTGGTGGAGACTACGACTGGTCGACAGTGAACCTTTGTTTGGTCGGCACAGGCAATGACTCGTCAACTGTCAACACCGGTTCCGCAAACTTGGAGGATGAATTGCCAACTATTAACATCGGATCTGCAAAATTGGACAGCAAATTGCTAACTTTAAACCTTGGTTTGGTCCACGAAAGTGTCGACAGTTTCAGAACAAATGAACCCCTGGACAGGTTGGACCAGGAAACTAATGAATTGACGCAAAATGACTGGGAGATTTCTTCCTCAAGTGATTATTCCTCAGAGGTCTCTGGACTGATTTACTCCAACTCAGATGACAAACGCTGCAAGTACTGCGGGGTCATAATTCCCCAACTCGAGGAACTTGCGATTCACCTCACACAGCACTACAAAGAAAAACCGTTCTTTTGCAACGTGTGTGGGGcgatattcaaattaaaaacgcAACTCACTGTGCATATGTTCACGCACACAAAAGAAACCATTTTTACATGCGACATTTGTAAATCTGGGTTCTATACAAAGAGTCACCTGAGATGCCACATGCTAACACACACCGGCGAGCGCCCGTACGAGTGTCCCACCTGTGGTGCCCGGTTTAATCAAAGCTCGCATTTGAAGAGGCACGTTCATGTCCACGACTCGAACCGACCAAAGAAAAGAGAGCCCATGGCTAAGAAGTATTTTTGCGAGAAGTGTGATGCCAAGTTTACTACGGTAGCGAGTTGCAAGTTACACATGTTGTACACCCATGAACGTTTGGTGAAATACTCTTGTTCACACTGTAGCGCCGAATTTTACCACAAGGCTAACCTCAACGCTCACCTAAGAACGCACACCGGCGAACGTCCATTTCATTGTAAGGTTTGTGACGCCAGCTTCAAGCAAGGCTCCCACCTCTTGAGACATTCCTGGATACACTCGGGTAAAAAGCCCTATCCCTGTTCGTTCTGCAACATGTCGTTCAGACAGAAGTTCTCTTTGAAGTGCCACACGTACACTCATACCGGAGAGAAACCGTACGAATGCCCGGTCTGCGGGAAGAGGTTCCGATCACCGGGTGACATGAGCAAGCACAAAGTCTCTCATACGAATCGGAAGCTATTTAGCTGCATGCTTTGTGACCGAACTTTCTTCTACAAAGTCTCGTTGAAAAACCACATCTTCACACACACTGGAGAGTCAAAGAGGTACACCTGCAATACTTGTGGCAAGAGTTTATCCAATAAAAACTCACTTTACCATCACGAGTCCTCGCATCATCCAAAGGACGATACAGTTGAGGGCCAGTCTTGA
Protein Sequence: MEPAPYAGIVPVTDISSDLFPAEIEIKEAACESVFCWSEHCDNCRATKEMFVVIKDLSYTGGDYDWSTVNLCLVGTGNDSSTVNTGSANLEDELPTINIGSAKLDSKLLTLNLGLVHESVDSFRTNEPLDRLDQETNELTQNDWEISSSSDYSSEVSGLIYSNSDDKRCKYCGVIIPQLEELAIHLTQHYKEKPFFCNVCGAIFKLKTQLTVHMFTHTKETIFTCDICKSGFYTKSHLRCHMLTHTGERPYECPTCGARFNQSSHLKRHVHVHDSNRPKKREPMAKKYFCEKCDAKFTTVASCKLHMLYTHERLVKYSCSHCSAEFYHKANLNAHLRTHTGERPFHCKVCDASFKQGSHLLRHSWIHSGKKPYPCSFCNMSFRQKFSLKCHTYTHTGEKPYECPVCGKRFRSPGDMSKHKVSHTNRKLFSCMLCDRTFFYKVSLKNHIFTHTGESKRYTCNTCGKSLSNKNSLYHHESSHHPKDDTVEGQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447859;
90% Identity: iTF_01447859;
80% Identity: -