Tpod052632.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000012.1:54495056-54501145[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00019 0.036 16.3 0.2 1 23 202 224 202 224 0.96 2 10 3.2e-05 0.0061 18.7 0.1 1 23 230 252 230 252 0.97 3 10 2e-05 0.0038 19.4 3.8 1 23 257 279 257 279 0.94 4 10 0.045 8.7 8.8 3.2 1 23 285 307 285 307 0.98 5 10 0.0095 1.8 10.9 2.4 1 23 313 335 313 335 0.98 6 10 1.1e-05 0.0021 20.2 0.5 1 23 341 363 341 363 0.98 7 10 6.7e-06 0.0013 20.8 0.4 2 23 370 391 369 391 0.97 8 10 1.1e-05 0.0021 20.2 3.1 2 23 398 419 397 419 0.97 9 10 9.2e-05 0.018 17.3 1.0 2 23 424 445 423 445 0.96 10 10 0.00098 0.19 14.0 3.1 1 23 451 473 451 473 0.97
Sequence Information
- Coding Sequence
- ATGGCATACCAGTTGACCAAAGGCGTTTACAATAAACGATCGGTGTGTCTCAACGCCAAGCTCAGACACTACTGCACAGTCATTCGACTGGAGGCCCTGTACACAGCAGAATACTTCGCGATGAATAGGAAAGTTCTGACCGAAAAACTAGAAGccaagaaagaaagaaagatccTGAGAAACAACTGGGGCCCAGTCAAAGAAAACAGTGAGCTCAGAGTgatggaggaggaggaggaggaggaagcaGCAGAGATGCTAGTCACAGAGGTAGACACTTCCTCTTTCCCCCCTCTAGAAAATCTGGAGGATGCTGACAACTCGGACTCTCAAGAAGACCGTTCTGCTGACGAATTATCTACACTATCGCCTACGATTAGTTCAGGTAGAAAGGTGAAGAAGCGCAAAGGCAGGCGAGCTGACCTTGAGAATGTTGGACTAAGCTCAGACATGAGTGATGGAAAGTTGGTAAAGACTTGTACAACTGATAATGGGAACAGTTCCCTTGAGCTTCACTGGTTGTTGTCAGGTGATCACAATGAGCCGTCCTCGTCAACGTCACGGCCAATCAAGCAACCATCCATCCACTGGACACCCCAGACCTATGCTTGTTCCGAGTGTGGTGTGATGTTTGCTTCCAACTTCTTCCTGAAGCAGCACCTGCTCGGCCATGACGGGGTCAAGAAGTTCGCGTGCGAGATCTGCGGTGTCAAGTTTGCCCGCAAGACGAGTCTAAGCACCCACGCTAATGTCCACGCAGAGAAGAAGTTCCAATGTAATATCTGCGGTACTAAATTCACCCAGAAGTGTAGTTTAAAGAAACATTCTGTGATTCACACAGGAGAATTGCCCTACCCCTGCACGTTGTGCGACGCAAAGTTTAGGTACTACACAAGTTTAAGTTGCCACCTCAAGATGCACTCAGGTGAACGATCCTTCCAGTGTACCGTCTGTGATGCCAAATTCCTCAACAACTGCAGCTTGAAGTCCCACTATGCGATGCACACTAAAGACCGACACTACCAGTGTGAGTCCTGCCCGTTGAGGTTTGCGGACCGTAGCAGTCTGACTCGTCACAAGCTAATTCATGATCCCGACAACTATGTTGTCTGCGCTATCTGCGGGTCCAAATTCCCATACAAGCATGCGTTGGCCCGTCATATGCGCACTCACACAGGAGATAGGCCGTTAAAGTGTACAGCCTGCAACAAGAGTTTTTTCACAAAGTCTAACTTCAACAGCCACATGCTTCGGCACTCAACCAAAGGTAAATGTCTGATCTGTCACGAGACATTCGTGCGAGAGGAGACTTTCAAGAAACACATGGCAGGCCATCCTGCGGTAAAACCCTTCCAGTGCTCATATTGCGAGCAGAGGTTTTGGAGGAAGGCTCACCTTAAACAACATGTTCTCCAGCATCTGGACAATACTCTAGTCCGCTGA
- Protein Sequence
- MAYQLTKGVYNKRSVCLNAKLRHYCTVIRLEALYTAEYFAMNRKVLTEKLEAKKERKILRNNWGPVKENSELRVMEEEEEEEAAEMLVTEVDTSSFPPLENLEDADNSDSQEDRSADELSTLSPTISSGRKVKKRKGRRADLENVGLSSDMSDGKLVKTCTTDNGNSSLELHWLLSGDHNEPSSSTSRPIKQPSIHWTPQTYACSECGVMFASNFFLKQHLLGHDGVKKFACEICGVKFARKTSLSTHANVHAEKKFQCNICGTKFTQKCSLKKHSVIHTGELPYPCTLCDAKFRYYTSLSCHLKMHSGERSFQCTVCDAKFLNNCSLKSHYAMHTKDRHYQCESCPLRFADRSSLTRHKLIHDPDNYVVCAICGSKFPYKHALARHMRTHTGDRPLKCTACNKSFFTKSNFNSHMLRHSTKGKCLICHETFVREETFKKHMAGHPAVKPFQCSYCEQRFWRKAHLKQHVLQHLDNTLVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -