Tpod018319.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema podura
Gene Symbol
salm
Assembly
GCA_033556935.1
Location
JAVRXN010000005.1:15682348-15715874[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 6.3e-06 0.0012 20.9 0.9 1 23 395 417 395 417 0.98
2 9 1.2e-05 0.0024 20.0 2.1 1 23 423 445 423 445 0.98
3 9 0.078 15 8.0 3.8 2 23 770 791 769 791 0.98
4 9 7.6e-08 1.5e-05 27.0 0.6 1 23 797 819 797 819 0.97
5 9 7.5e-05 0.015 17.5 2.6 1 23 829 851 829 851 0.98
6 9 0.0032 0.62 12.4 2.1 2 23 1130 1151 1129 1151 0.97
7 9 5.5e-07 0.00011 24.2 1.4 1 23 1157 1179 1157 1179 0.99
8 9 1.7e-06 0.00033 22.7 4.0 3 23 1261 1281 1259 1281 0.96
9 9 1.4e-07 2.7e-05 26.1 0.9 1 23 1287 1309 1287 1309 0.98

Sequence Information

Coding Sequence
ATGCCCTATTTGAGCCATCTGTGCGGACGTGAGGGCTCAGGATCGTGCTCGGAAGAAGAAGGGGGTGGTGGCGGCGGCAGCAATGGGGGCGGGGTCACCCAGGAGGAGGAACTCGCGTGCCGGAACTGCAGGCTCCAGTTCCTGAGCGTCGCCGACCTGACGGAGCACGTCAAACAATGCTACCTCAACAACTCGGACGACCCTGAGGATCTCGCCTTGGCGCCGGCGTCCGAGGACGAGGAGGATGATGATGACCTCGAGGACGACGACTGCGGAGGGAAGAGGCTGAGACAGAGGCAGGACGTCGAGAATAACAACGGCGACGAGGTTGACCCTGAGGTTGAATTGGACGGTGAAGAAGGGGATGGCGTCACTCCTACACCAATAGGTTTCCCGTTCCCCGGTCACGTGACGCTGGAGGCGCTGCAGAACACGAAGGTAGCCGTGGCGCAGTTCGCCGCCACCACCATGGCCAACAACGCCGACAACGCCGCGGCGCTGCAGGAGCTGGCCGTCCTGCAATCCACGCTGTTCACGCTACAACACCAACAAGTCATGCAGCTGTCGCTCATTCAACAGCTCCAGCAGCAGCTGCAGATCaccaagaccaccaaggacggcaGTCCCGTATCGCCGCCCCCGCCACCCACCTCTCTCCCGCTGTCCGTCCCCATGCCGATGCCCGCACCCCCCACGCTGCCACCTCCAACCCCGATATCACGTCCCCCGACCCCTGTGAAACCAGAACCGCCCCCGCCTCCACCCCCAACATCTCAGTCCATCCCTGCCACGTCGCAGTCCCAGCAGCTTCCCGCGCAGCCGCCTCGCTCTTCCCCTGCTCCCATCACCTCCAGTGCCCTCATTATCCCTAAACCTCCCACGTCATCACCTCCCGTACAGCAACCTCCTCCCCCACCTCCACCTCTTCCCTTCTCGATGTGCTCCATCTCGGCGTCTCTCGCCTCCTCCATCATCAACAACTCGGACCCTATGCCGCTGCCAAATGAGCCCAACACTCTAGAGATGCTGCAACGTCGCGCGCAGGAGGTTCTGGACAACGCCAGCCAGGGCTTGCTCGCCAACAACCTTGCCGATGAACTCGCCTTCAGGAAGAGCGGGAAGGGCGGAAGCCTGTCCCCTTACGACGGAAAATCCGGTGGCCGGAACGAACCTTTCTTCAAGCACCGGTGCCGTTACTGCGGCAAGGTGTTCGGGAGCGACTCCGCGCTCCAGATCCACATCCGATCTCATACAGGTGAGCGGCCTTTCAAATGTAACGTGTGCGGCAGCCGGTTCACAACCAAGGGCAACCTTAAAGTCCACTTCCAGAGGCACACTGCCAAGTTCCCGCACATCAAGATGAACCCCAACCCGGTCCCCGAGCATCTGGACAAGTATCACCCTCCCTTACTCGCACAGATGCAGAGCTCCTCGTCCCACCATGGGAGTCTGTCTCCCAACCACCCGCCACCATCCCACCACCCCTTCCACTCAGGAGGCTACCCTCCCACCTCTCTACCACTGTACCGACCACCTCCCCCACCACCTCACGACTTCATGCCTCACCACCTCCATCCACCCTCTCAACACCGACCCTTAGAGCCGCAACTCTCCAAACCACTCTTACCACATCCCATATTCGGTCCAAGGATAGAGCAGGACGTCCCGGAGAACCTGAGCAAACCTCAGTCTCTACCACCCGCACCTAGGAGTGTCTCCTCGTCACCGCCACCCCCACCCGACACCCCAGACAGGCTAAAGAGGGAGCCCATGGACGAGGAGGGGACAttggggggaggaggaggaaggGTTTCACCTAAACAGGAGCCGATGGAGCCGGAGCAGGATGTTGACCACGAGATGCAGGAAGAGCCGGAGCATGAAGACATGGGGAGGTATCCCTCTTCTCCACCCCTTTACGACGACTGCAGTTTGGAGAGTAAATACAGCACCGAGCCTCCAGAGAGTCTTAACGAGGACAGCATGGAACTTCAGGAGCAGCCCGAGAACCTTTCGAGTAAAGGTCCACCGCAGATAGGTCAGAGGTTACCGCCATCACTACCGTTCCCTCAACCTGTGTCTCCTCCGGGGAGCACGTCGTCGGGGAGTGGTCACATGGGTGCTATGCCGATAATGATGGGGGACATTGACCCCTCCAAGGACCCCGCCATCTACACCAACCTCCTGCCCCGGCCAGGTAGCAATGACAACTCCTGGGAGAGCCTTATAGAGGTCACCAAAACGAGCGAGACGTCCAAACTCCAACAGCTCGTCGATAACATCGAGCACAAGTTGAGTGACCCCAACCAGTGCGTGATCTGCCACAGGGTGCTGTCCTGCAAGAGCGCCTTACAGATGCACTACCGCACACATACTGGTGAGCGTCCTTTTAGGTGTAAGATATGTGGTAGGGCGTTCACGACGAAGGGTAACCTTAAGACGCATATGGGGGTACACCGGGCGAAACCCCCAATGAGAGTCCTCCACCAGTGTCCCGTCTGCCACAAGAAGTTCACGAACGCATTGGTCCTCCAACAACACATCAGACTCCACACGGGGGAGCCCACCGATCTGACACCGGAACAGATACAGGCCGCTGAGATCAAGGACTATCCCCCTCCTGCCTCGTTCCCTCTCCCCAACTCCATGAGCCCCTTTCTGGCACACGGGTTTCCCATCCCGGGGATGCCACCGATTCCTCCTCACGGGCTGCACATGGGGCTCAGGCACGAGCTCGATGATAGGAGGGAACGTGACCGAGAACGGGACATGAAGGACGAGTACGGGAAgccagattttttaaatgacgAGAACTCTAACAGTAGTGGAGGGGATGGCCATCCCATGCCCTCGTTTTCGACGTCACTGGCAGCTCTCGAGAACCAGGTGCGGACAATCACGACAATGGCGTCGCAACTTTCCGCTACAGGTTTCAACCGATCGATCGAAGACTTACGCGTCGTCTCCGATAAGACTCCCACCACAACCCCAATGAACGGGGACAAATCTCCCGCGGGGCTCGGCATCCCGCATCTGGGGAGTCCCGCGGGCTCGGAGATGCGAACGTCGCCGTCACCCCCACCACCACAGACGCCCCATCACATCACCTCCAGGCCGCCATCGAGGTCCCAGCAGCACCTGGGACCATCAGCGAGTCCGGCGCCCTCCGATTCCAGTTCCCTCGGGGCTCTGGATCTGACACCTCGCTCCGCCCCCGGACCGCCGCCTCACAGTGTATTCTCGGGGTTCGGCATGGTACCACCCCCTACGGGGTCCTCACCGCTTATGACGTCAGCTCTCTCGTCGCTCACTTCGTCTGTGTTAACGTCGACGGCGTTCAGCCCGCTCGGACTGGCGATCGGCCCTGCAGTCCGGCCTGGTAACACCACCTGCAACATCTGTTTCAAGACGTTCGCATGCAACTCCGCTCTCGAGATTCATTACAGGAGTCATACCAAGGAGAGACCTTTCAAGTGCACCGTGTGCGACCGGGGCTTCTCCACCAAGGGCAACATGAAGCAACACATGCTGACCCACAAGATACGCGACATGCCCTCTCACCTGTTCGAGACGAGCAagcccctcccccctcacctACCGCCCAACATGCCGGCAAGCGACGACTCCAGCAACCTAGAGGACTCTCGCCCTTTGGGGGGGCCCTTTCCCCCTCACCTCGACCCTAGCAAACCTGCTGACCTCGGGATTAAGAGGTCACCACCCGAGGGGGAGGGGTTGCTGCCCATACCTAAGAGACAACCAGGCTTGCCCAAGCACTTGTGCCATGTTTGCAATAAGAACTTCTCATCCTCCTCGGCCTTGCAGATACACATGCGCACGCACACCGGCGACAAACCTTTCCGATGCACTATCTGCCAAAAGGCCTTCACCACAAAGGGCAATCTTAAGGTGCACATGGGGACTCACATGTGGAGCAACGGGGCGTCACGCCGGGGCCGGCGCATGTCACTAGATCTGCCTCCGATCCCGATGACACCCAAGGATTCAGAGTTTCTCCAGCGGAGGCCGGACCTCTTCTATCCCTATCTTCCAGCTCCGTTCCTTAACGGCATGCAGCAAAAGCTGAACGAAATCTCGGTGATACAGAGTGTGAATAGCAGTAACGGCAGTGGGCTGAGTCCTCCCGGCGGCAAGTACGGCAGCCTGCTAGGTTTCGGTAGCTACGGCGGTGGACCAGACAAGCCGCTGATGCCCGAGCCACCTCGGTCTCAGACAAACTCTCCTCTCTCCGACAAGCCTCCCTCGTCCATGTCGTCCCCTCCGCCAATGTCCCTGTCTTTGGGCAGTCACCACGGGTCTCCGCCCTCCCGGGAGTCAGGAGGCGACGAGAGGAGTGTCTGGGACTTGCATTACGAGAGGAAATCAACCAGTGATGAGCCCATGGACGTTTCTCCCTCCCCGATACCACCCCCTCGCGGAGAGGGCTTGGCTGCATAA
Protein Sequence
MPYLSHLCGREGSGSCSEEEGGGGGGSNGGGVTQEEELACRNCRLQFLSVADLTEHVKQCYLNNSDDPEDLALAPASEDEEDDDDLEDDDCGGKRLRQRQDVENNNGDEVDPEVELDGEEGDGVTPTPIGFPFPGHVTLEALQNTKVAVAQFAATTMANNADNAAALQELAVLQSTLFTLQHQQVMQLSLIQQLQQQLQITKTTKDGSPVSPPPPPTSLPLSVPMPMPAPPTLPPPTPISRPPTPVKPEPPPPPPPTSQSIPATSQSQQLPAQPPRSSPAPITSSALIIPKPPTSSPPVQQPPPPPPPLPFSMCSISASLASSIINNSDPMPLPNEPNTLEMLQRRAQEVLDNASQGLLANNLADELAFRKSGKGGSLSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHIKMNPNPVPEHLDKYHPPLLAQMQSSSSHHGSLSPNHPPPSHHPFHSGGYPPTSLPLYRPPPPPPHDFMPHHLHPPSQHRPLEPQLSKPLLPHPIFGPRIEQDVPENLSKPQSLPPAPRSVSSSPPPPPDTPDRLKREPMDEEGTLGGGGGRVSPKQEPMEPEQDVDHEMQEEPEHEDMGRYPSSPPLYDDCSLESKYSTEPPESLNEDSMELQEQPENLSSKGPPQIGQRLPPSLPFPQPVSPPGSTSSGSGHMGAMPIMMGDIDPSKDPAIYTNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEIKDYPPPASFPLPNSMSPFLAHGFPIPGMPPIPPHGLHMGLRHELDDRRERDRERDMKDEYGKPDFLNDENSNSSGGDGHPMPSFSTSLAALENQVRTITTMASQLSATGFNRSIEDLRVVSDKTPTTTPMNGDKSPAGLGIPHLGSPAGSEMRTSPSPPPPQTPHHITSRPPSRSQQHLGPSASPAPSDSSSLGALDLTPRSAPGPPPHSVFSGFGMVPPPTGSSPLMTSALSSLTSSVLTSTAFSPLGLAIGPAVRPGNTTCNICFKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKGNMKQHMLTHKIRDMPSHLFETSKPLPPHLPPNMPASDDSSNLEDSRPLGGPFPPHLDPSKPADLGIKRSPPEGEGLLPIPKRQPGLPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISVIQSVNSSNGSGLSPPGGKYGSLLGFGSYGGGPDKPLMPEPPRSQTNSPLSDKPPSSMSSPPPMSLSLGSHHGSPPSRESGGDERSVWDLHYERKSTSDEPMDVSPSPIPPPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-