Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000008.1:8034890-8049083[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00034 0.067 15.5 0.2 1 23 338 361 338 361 0.95

2 16 1.9 3.6e+02 3.7 3.3 1 23 366 391 366 391 0.97

3 16 0.77 1.5e+02 4.9 0.1 2 20 525 543 524 545 0.91

4 16 0.054 10 8.5 4.0 1 23 551 573 551 573 0.98

5 16 0.0027 0.51 12.7 0.5 1 13 579 591 579 592 0.93

6 16 0.00041 0.079 15.2 2.4 1 23 624 646 624 646 0.95

7 16 0.00022 0.042 16.1 6.8 1 23 654 676 654 676 0.98

8 16 6.3e-05 0.012 17.8 0.8 1 23 682 704 682 704 0.96

9 16 4e-05 0.0078 18.4 5.2 1 22 710 731 710 731 0.96

10 16 0.0012 0.23 13.8 0.5 1 23 738 760 738 760 0.97

11 16 0.072 14 8.2 0.1 1 23 776 798 776 798 0.98

12 16 6e-06 0.0012 21.0 1.0 3 23 806 826 804 826 0.98

13 16 0.00063 0.12 14.6 0.2 1 23 832 854 832 854 0.98

14 16 2e-06 0.00038 22.5 0.2 1 23 860 882 860 882 0.98

15 16 0.00021 0.041 16.1 0.6 1 23 889 911 889 911 0.98

16 16 0.0042 0.82 12.0 1.7 1 23 917 939 917 939 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00034	0.067	15.5	0.2	1	23	338	361	338	361	0.95
2	16	1.9	3.6e+02	3.7	3.3	1	23	366	391	366	391	0.97
3	16	0.77	1.5e+02	4.9	0.1	2	20	525	543	524	545	0.91
4	16	0.054	10	8.5	4.0	1	23	551	573	551	573	0.98
5	16	0.0027	0.51	12.7	0.5	1	13	579	591	579	592	0.93
6	16	0.00041	0.079	15.2	2.4	1	23	624	646	624	646	0.95
7	16	0.00022	0.042	16.1	6.8	1	23	654	676	654	676	0.98
8	16	6.3e-05	0.012	17.8	0.8	1	23	682	704	682	704	0.96
9	16	4e-05	0.0078	18.4	5.2	1	22	710	731	710	731	0.96
10	16	0.0012	0.23	13.8	0.5	1	23	738	760	738	760	0.97
11	16	0.072	14	8.2	0.1	1	23	776	798	776	798	0.98
12	16	6e-06	0.0012	21.0	1.0	3	23	806	826	804	826	0.98
13	16	0.00063	0.12	14.6	0.2	1	23	832	854	832	854	0.98
14	16	2e-06	0.00038	22.5	0.2	1	23	860	882	860	882	0.98
15	16	0.00021	0.041	16.1	0.6	1	23	889	911	889	911	0.98
16	16	0.0042	0.82	12.0	1.7	1	23	917	939	917	939	0.93

Sequence Information

Coding Sequence: ATGGACACCATTTGTGAAGATGAGACTATGGAATATGGTGACGACTTCAATCCTTATGGATATGAAGATACGTATGACAGTACAGGTATAGACATAACATCAGAAAATGTCGCCATATATGGAAATATCAAAGAGGAGCCACCAGTTGAATGTGAAATCGAAGAGTATCAACTAGAAAATGACCCCAGGGGGGCAGAGATGGACCTGGCTCACAAGATTCACACCCATCTACCAATTTTGGTAACCGTAAATGATCTTATGCCAGTGAATGTGTGTGAAGCCTGCATTCTTAAACTGGAAATATGTCACAATCTGGTTAAAGTTTGTTTGGAAGGTGATATGAAGCTCAGGACTATCATGGGCCTTCCTACTGATATGGACGAACCAGAAGAAATAGACCTAGAACATGATTCTTATGGTGAGCTCCCAGTTGAACCAGTTTTGTGCAAAGAAGCCCTTGGTAGTGAAATCCTGTCTAGAACAGTAAAGAGGAGAGGGGAGCGTAAAGCCCGAAAtggaaccaccaataagcaggcAACTTCGAGAATAAATCAGACTGCCGCTAACCTCACCGTAAATGGCCGGCAACCTCAAGACTATGGAGATATTACCGCTCTTCGTGTTAAAAGAGGGAGACCTAGAAAGATCGATCGGCAGATGTTGACAGAGGAAAACTTTACACAAAAGATTAAAAACcaacaatataaaattgttgTCGTTAAAGCTAAGTCTAAAAAACCAATGACCCAGAAggatattatgaatattttgaaaactcaaGGGGGTCAGCATAAATTTATCATGAAAACCCAAGGACAGCATAAAAATATTCCTGATAAGACCAATGCAAGAGTTTTGAAAAGCACCTCTGCGCAGGTAGAAGAGGAGGTTTTGGAAACTGAAACAAACCTAGATGATTTCAGTGGTGAGGCGGAGCCGCAGGTAGACACAACACCCACTGTAACGTCTTCTCACGAAGGTACAAAACGACGTGTTGCTCTAGGAGACATTTACCGTTGCGTCTATTGTGACAAGTCTTTCATTGGCAATGAAAGACTCCTAGCCCATCAGTCCTTGGCACATTCAGATGTAGTTTTTACGTGCACAAAGTGTCAACCTCATCTGTATTTCTACGAATCCAAGGACTTGTACGACAAGCACATGCTACGCCATGTGCTGGAAGACGAGGAGGAGGAGGATCTCGAAGATTATCTCTCTCGGTCTTCTTCACGGAATGAGGAAAATGAAGATGGTACTGAAACCACATCAGGTGAGCAAAAAAAGGGGGATCTTGAAATAACCAGTGTGTGTCAAGTTGAAGTAGAGGCTTCAAACATTAAAGAACCAACAAGTCCTAATATGCGTATAAAACTGTCCAAAGAATTTCAAGACATGAATGAAGATCTCCAGTCAAAGATTCTTGAAACCATTCAAAAAATAACAACTACTAATAGAACAGAAAATGTCGAAAACCAAATTGGCGCTACGGGAGAAGAAAATGCTCCGCCAAATCAAGACGGTGCAAAATCGGCCACGAAAAAATCTAGGAAACGAGCACAAATAACGGGCTGGTACTGCAGGCAGTGTGATCTGAAATTTGACACCGACACAGGTTTGATAGAGCACAAGCAAGAGAATGTTTGCACGGTGCACCAGTGCAAGTACTGCAAGAGACAGTGTCAGTCTGAGGCGCTCCTGGTAGAACACGAACGCATGCACACCAACGAGAGGCCCTACATGTGCGAATACTGCGGCAAAAGTTTCCGCACGCAAGCTATCTGCGCACTCACTTGTATTCTCACAGCTTCGATTTCATTTACCAACAAGTCGGTGTACCAGTACCATTGCTCCAAGCACACACAAGGGGAGTTTCTTTGCGACTTGTGTGGGAAGGTCCTCAAACACAAGGCTAGTCTTCAGATGCACAAGAAGAGACATCTCAACCCTGAATTCCTCAATTTCAGCTGTGACATATGTCACAAGACCTTTAAAAACAGATTCCACATGAGTGAACATCGTCGTGTGCACACCAAAGAACGTCCCTTCAAGTGTCCCCAATGCACGAAGCAATTCCGCACATTGGCTCAACTTAAGCTACATTCAGCTGTTCACTCCGACATTCGTAAGCACAAGTGCACCACATGTGGTCGGCGCTTCACACACtacagtaatttattaaaacaccgTAAAACCATGTGCAGGCCCAACAAATTCATTTGCAACATTTGCTCCGACTCATTCTCCAACTCTCCAGATCTTTTCACTCATCGTCTGAGTCATACTCGACAGGACGGTGCGACGACAACAACTCTGAAACCAGAATCCTACGAGTGTCCTGATTGTTTCAAGCTCCTGCCTTCCAGGGCTGCGTACGGCACCCACAGGTTGACACACACCCTCGACGGCGTCTTTGGCTGCGAATTTTGTGGAAAGGTTTTCAAAAGTAAGATGTACCTGAATATCCACCTTcgcaaacatacaaatgagttGCCACACCAGTGCCAGTATTGTGACGCCGCCTTCACAATCCGCGCAAGTTTGGTAGTCCACGAGCGCATCCACACCGGTGAAAACCCTTATAAATGTGGCATGTGCGACAAAGCATTCCGCTCCAAGGTCAACCTTGTGCAACACGTGCTTGTTCATTCAAACGAGCAGCGGCCGTATGCTTGTTCAGACTGTTCGTTGACATTCCAACGTCGTGATACTCTTTTGATTCATAAACGCATTCATACCGGGGAGCTCCCTTACATGTGCAAGGTTTGTGGGAGAGGCTTTAGACAAAGAGGAGATTGCAATAAACACGAGGAGTTGCACTTTAAAAATGATGGTCAAGATTTAATGAGTGAAAGTGATGCAGAGTAA
Protein Sequence: MDTICEDETMEYGDDFNPYGYEDTYDSTGIDITSENVAIYGNIKEEPPVECEIEEYQLENDPRGAEMDLAHKIHTHLPILVTVNDLMPVNVCEACILKLEICHNLVKVCLEGDMKLRTIMGLPTDMDEPEEIDLEHDSYGELPVEPVLCKEALGSEILSRTVKRRGERKARNGTTNKQATSRINQTAANLTVNGRQPQDYGDITALRVKRGRPRKIDRQMLTEENFTQKIKNQQYKIVVVKAKSKKPMTQKDIMNILKTQGGQHKFIMKTQGQHKNIPDKTNARVLKSTSAQVEEEVLETETNLDDFSGEAEPQVDTTPTVTSSHEGTKRRVALGDIYRCVYCDKSFIGNERLLAHQSLAHSDVVFTCTKCQPHLYFYESKDLYDKHMLRHVLEDEEEEDLEDYLSRSSSRNEENEDGTETTSGEQKKGDLEITSVCQVEVEASNIKEPTSPNMRIKLSKEFQDMNEDLQSKILETIQKITTTNRTENVENQIGATGEENAPPNQDGAKSATKKSRKRAQITGWYCRQCDLKFDTDTGLIEHKQENVCTVHQCKYCKRQCQSEALLVEHERMHTNERPYMCEYCGKSFRTQAICALTCILTASISFTNKSVYQYHCSKHTQGEFLCDLCGKVLKHKASLQMHKKRHLNPEFLNFSCDICHKTFKNRFHMSEHRRVHTKERPFKCPQCTKQFRTLAQLKLHSAVHSDIRKHKCTTCGRRFTHYSNLLKHRKTMCRPNKFICNICSDSFSNSPDLFTHRLSHTRQDGATTTTLKPESYECPDCFKLLPSRAAYGTHRLTHTLDGVFGCEFCGKVFKSKMYLNIHLRKHTNELPHQCQYCDAAFTIRASLVVHERIHTGENPYKCGMCDKAFRSKVNLVQHVLVHSNEQRPYACSDCSLTFQRRDTLLIHKRIHTGELPYMCKVCGRGFRQRGDCNKHEELHFKNDGQDLMSESDAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447771;
90% Identity: -
80% Identity: -