Tpod037554.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000009.1:116024286-116039574[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00063 0.12 14.6 0.4 1 23 426 449 426 449 0.97 2 14 0.00042 0.082 15.2 1.1 2 23 474 495 473 496 0.94 3 14 0.0013 0.25 13.7 0.5 3 23 503 523 502 523 0.97 4 14 0.00038 0.074 15.3 4.2 1 23 529 551 529 551 0.98 5 14 2.9e-07 5.5e-05 25.2 0.8 2 23 558 579 557 579 0.97 6 14 1.2e-05 0.0024 20.0 0.7 3 23 587 607 586 607 0.99 7 14 3e-06 0.00058 21.9 1.4 2 23 614 635 613 635 0.94 8 14 0.00044 0.086 15.1 1.0 1 23 641 663 641 663 0.98 9 14 8.7e-06 0.0017 20.5 2.5 1 23 669 691 669 691 0.98 10 14 0.093 18 7.8 0.6 1 23 706 728 706 728 0.97 11 14 0.012 2.2 10.7 0.1 1 23 735 757 735 757 0.95 12 14 5.2e-06 0.001 21.2 0.7 1 23 763 785 763 785 0.96 13 14 1e-05 0.002 20.3 1.1 1 23 791 813 791 813 0.98 14 14 2.4e-07 4.6e-05 25.4 1.4 1 23 819 841 819 841 0.98
Sequence Information
- Coding Sequence
- ATGAGTAATCGTAGATGTGCTGCAAGAACGTGCTTTAATATGCAAGGATGTCGTCCTaaccttaaattatttccatTTCCTAAGGATGAAATAGCAATGCGGGAATGGGCGAAAAACTGTGGCAGATCGGATCTCTGTAAACTTCCCTCTGAAAAACTGAGCAAATTCCGTCTTTGTGCCAACCACTTTGAATTGCACTGGTTTCTTAACCCCAAATACAAGACGAGGTTCAAGCCTTCTCTCCAGCCTATCccaacaatattttacaataaccTGAGAGATTTTGTCCCAAAATCTCTGCAAAATTCGTGTCCTCTTTTGAATGAAGGGTCTTCTGTCGGTGAGCCTTGCCAGACTGGTGGGTGTAGCGCATCCCATGAGATCACCGTGAAAAGGACAACCCGGTGGAAGGGTGGAGAGGTAGAAGAAAGGAGTCCCGGCAACACGGGTGTCGCGAAAATTGATGAAAACATTGAAGAAGTTCTGCAGCTTGACATTCCTACAGAAGACAACAGGCCAGAAGTTTTGAGTGCTTGCAGTGTGGTGTCTGACATCAGCGAAAAGATGTGCCGCTTATGCGCACAGCTGGTACACGAGACTAAGTTGATTGACATCTTTTCACAGGAGGAGACCGATCTTGTCTCAAAAATCAACAAATTCTTGCCAGAAAAGATATCGGTGGAAGACGGCCTGCCAACCCAAGCATGTACTTCGTGTGTCCACAAGTTGAATGATTGTGACGAAGCTGTCTCACTATTCATTTCTGCGGACAGGAAGCTGAGGACCCTTTTTCACAATGGCGATGAGAGTACTTCACAAATTCTGGCCAAGATACCTGTCATCATTGACGAGGACCACCGACTGCCCGTTCGATTGGAGACATTCGAGGGCTCAGAGCAAACCTACACAATCACTAATGCAGATAATTTGCCAGTTCAGTACATTGATGAGGAGTTTCAAGATCAGTTATCACAAAATGGCAGTAAAGtctatgtaatatttaaaaaagattatgtGGCTTCAGACATAAATGCTGCTGAAGATTCAAGACCAGGAAGTATGTTTGAAGGCGAAGAGTTTGAAGTGCTCAGCCGAGAGGAACTTGAGTCAAGAGAGGCAGAGGGTTGCTGTGAAAACGAGGAGAGTTGTGACTATGTACAGGGAGATTTCGGACATCTTGTCAGCGTATCTCTTGGTAGGGAGGCGGAAGCCGAAACAGAACCAGTTCAAGATGGAGTAGTCATTGAGAACATTTCAACAACCGAGGTTAAACAATATAGATGCTTAAACTGCGATCAAACCTTTAATGAAAATAGTAAGTTATTGATTCATGAAATAACCGAACACATTGTTGAAAAACAAATCAAGGCTAATAATGAGTCATTCGTGTCCCACATACGATACAGACGAGAGAAGATGGAGTGCAAGGAATGCGGAAGTGTGTTTAATGGGAGGAAGCCTTTGAAGAAACATATACGAGAGCATCACATCCCAGCAGAGAATATCTGTCCCTTCTGTGGTGctcactataaaataaaaagtcaatTGCTTGTTCATCTCCGTTTACACACAAACGAAAAACCGTTTGTGTGTTCTGTTTGCACTGAAACATTCCACTTCAAAAAAGAGCTTCGGAGGCACAAACGTATTCATCTCGTATCAAAATCATTGACGTGCCATATCTGTGATAAGTCCTTCACCAACAGGGCAGCTTTGTGGCGACATGCCAGAATTCACACCATCAACAGGAACGTACTGTGCTCTCAGTGCGGTAAAATTCTCTCCAACTCACAGAGTCTCAGGGTGCACATGAGGACTCACTCGAGTGACCGCCCCTGCTCGTGTCCCACATGCGGGAAAAGTTTCAAGGACAACGCTTCTCTCACCAGGCACGAAGTGATGCATTCTGCTTTGAGGAATTTCAGGTGTGACATATGCCAGCGAGCGTTTTATAGCAAAGCTCTGGTGAAACAGCATAAGTTGAGCCACTCGGGTGTAAAACCTCACAAGTGCAATGTGTGTGGCGCATCTTTCAACAGGCTGGGCAACTTGAACCAGCACAAAAAGAAACATGTTGACTCGGACGGGAAGACCGAGTCCAAGAATGAGATTGCTTATGAGTGTGTAGTCTGTAACAAACGAATGCGATCTGAGCTGACCCTTAAATATCACCTTGCAAAACACACTGGGGAGAAGAAACCATTTGACTGCATGGCTTGCGGCAAACGATTTACTGCGATAGAGCCATACCGCGTACACATGCGTATCCACACAGGTGAACGCCCATATGTCTGCAACACATGTGATAAGGATTTTCGCAGCGCTTATACGCTTAAGCAGCACATGGGACTTCACAAAGATGAGTGTCCATACCCTTGTCCGTTTTGTGAGCGACGGTTCAAGAGGTTGCAGTCGCTCATCGTTCACAAGCGTACACATACCGGAGAAAAGCCCCATCAGTGTCCCGAGTGCGGCCGGCGCTTTGCTCAGAAAGGGGATATGTTGAAGCACATGAAGACTCACTTTCGAGACCAACCTTATTTGGGCAGCCAAGTCCCTGAGGAAATGGTTCTGGAGATAGATAATATTGCAGAGTTTGCGCTCAGTGACACAGACATGACCAACGAGTTTCTCATCGACATGCCGATTGTAGAGGTAGAAACAGAGTTGCACTGA
- Protein Sequence
- MSNRRCAARTCFNMQGCRPNLKLFPFPKDEIAMREWAKNCGRSDLCKLPSEKLSKFRLCANHFELHWFLNPKYKTRFKPSLQPIPTIFYNNLRDFVPKSLQNSCPLLNEGSSVGEPCQTGGCSASHEITVKRTTRWKGGEVEERSPGNTGVAKIDENIEEVLQLDIPTEDNRPEVLSACSVVSDISEKMCRLCAQLVHETKLIDIFSQEETDLVSKINKFLPEKISVEDGLPTQACTSCVHKLNDCDEAVSLFISADRKLRTLFHNGDESTSQILAKIPVIIDEDHRLPVRLETFEGSEQTYTITNADNLPVQYIDEEFQDQLSQNGSKVYVIFKKDYVASDINAAEDSRPGSMFEGEEFEVLSREELESREAEGCCENEESCDYVQGDFGHLVSVSLGREAEAETEPVQDGVVIENISTTEVKQYRCLNCDQTFNENSKLLIHEITEHIVEKQIKANNESFVSHIRYRREKMECKECGSVFNGRKPLKKHIREHHIPAENICPFCGAHYKIKSQLLVHLRLHTNEKPFVCSVCTETFHFKKELRRHKRIHLVSKSLTCHICDKSFTNRAALWRHARIHTINRNVLCSQCGKILSNSQSLRVHMRTHSSDRPCSCPTCGKSFKDNASLTRHEVMHSALRNFRCDICQRAFYSKALVKQHKLSHSGVKPHKCNVCGASFNRLGNLNQHKKKHVDSDGKTESKNEIAYECVVCNKRMRSELTLKYHLAKHTGEKKPFDCMACGKRFTAIEPYRVHMRIHTGERPYVCNTCDKDFRSAYTLKQHMGLHKDECPYPCPFCERRFKRLQSLIVHKRTHTGEKPHQCPECGRRFAQKGDMLKHMKTHFRDQPYLGSQVPEEMVLEIDNIAEFALSDTDMTNEFLIDMPIVEVETELH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446669;
- 90% Identity
- iTF_01445732;
- 80% Identity
- iTF_01449678;