Tpod054870.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000013.1:17649577-17659028[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.6e-05 0.0089 18.2 3.5 1 23 94 116 94 116 0.98 2 15 1.9e-05 0.0037 19.4 3.4 1 23 122 144 122 144 0.97 3 15 0.0012 0.23 13.7 3.5 1 23 151 174 151 174 0.94 4 15 0.00087 0.17 14.2 3.3 1 21 180 200 180 204 0.90 5 15 1.8e-06 0.00034 22.7 1.5 2 23 211 232 210 232 0.96 6 15 1.1e-07 2.2e-05 26.4 0.3 2 23 239 260 238 260 0.97 7 15 2.3e-05 0.0045 19.1 1.1 2 23 349 370 348 370 0.96 8 15 0.0012 0.24 13.7 5.3 1 23 376 398 376 398 0.98 9 15 0.024 4.6 9.7 4.7 1 23 404 426 404 426 0.98 10 15 8.3e-05 0.016 17.4 1.5 2 23 433 454 432 455 0.94 11 15 0.00062 0.12 14.7 0.8 1 23 461 483 461 483 0.95 12 15 1.9e-06 0.00037 22.6 0.2 1 23 493 515 493 515 0.98 13 15 3.7e-06 0.00072 21.6 1.9 1 23 522 544 522 544 0.98 14 15 2.9e-06 0.00055 22.0 0.8 1 23 550 572 550 572 0.98 15 15 1.6e-06 0.00031 22.8 1.2 1 23 578 601 578 601 0.97
Sequence Information
- Coding Sequence
- ATGTCAGGAACTTGTTTTGATTTTTCCAGACTGCACTTGTCGTGTTTTAAATCACTATGGTCTCTTCCTTACAGGTGTCGGAAAGAAATAGTTGTAAATAATATCGACTCCTCCAACGCCAGCATTGTTCTTCCTAAAGAGATAAGCAAAAAGACAGTCTCATGTTCTAGTAAAGCTAAGTCTGTGAAAACATTGAAGATTGTTGTAAAGAAAGGACAGTTAATGTATAAAAGGGGAAGAGGCAATTGTGCGATAAAACTCTCTTCTTGCGAGGACGTTCACAAATGTAACACATGTGGACGAGGGTTTAAACGTAAAACCACGTTAGACTATCACATCATGTCTCACAGCGACGACCGCAATTTCGACTGTTCCATTTGTAAGAAGAAGTTCAAGAGAGACAAGGACTTGAGGAAGCACTTGACAACTCACAACAGGGAACACATGAGGTATTTCTGCAACTCTTGCGACTACGTGTGCAACCGCAAATCCAACTTGGAACTCCACCGTGTTCGAAGACACTCGAAGGAGTTCAGTTTTTTCTGCGACATTTGCGGCAAAGGTTTCTGTTCCGACTCTCAGCTGCGATACCACCGTAGTAACAAGTCTCACACGGGCGAGAGTCAGTGCGTATGCTCGGTATGTGGCAAGACAGTCTCTAACAAGTACAATCTCAAAGTGCACGTTCAGACACACACACCAGATAAGCAGATCGTGTGCGATGTTTGCGGTAAGACGTTCACGCAGATGAGCAATCTCAAGATCCACTATCGCATCCATACAGATTCTGGACTAATATTGTTCTTCACTTGTCCATGTCAAGTTGCTAACATCACATTTTCCCTGTCGTTGAAAGATATTTATCTTAATTGTGTGAGAAGCTCAGCCGACTGCTCTCGCATCTCCCAAGAAATAGGGGCTTCTAAATTATCAGTTTCACAAGAAACGGACATCGTCAAATTTCTTTTGATCCCAAACAAAAGGGGCTCCTCTAAGATAATATCAGTAGATAATGTTGTTTCTCTCAGTTCTTGCCAATCTCTCATCTGTGATGTGTGCCATAAAGAGTATGTTTCAATCGACTCTCTACGCAGGCACATGAAGAGGCACAGAGAGGAGCGACCCTTCACGTGCAACGTATGCACGAAATGTTTCAAATGCAAGAGTGAACTGGTCGCCCACCAGACGGTGCACAACGGAAACTTCAAGTTTCACTGCGAGTTTTGTCGATACGTGTCGAACCGTAAGACCAACCTAGTGTTACACCGAAAAAGGCATCTGAAGCAGTATTCCCTCAGCTGCGACGTATGTAGAAAAGAGTTCTATTCGAAAGGGGATCTTAGGGAACATATTAGCAGACACCACTCCGGTATCAAACCTTTCCTGTGCGATATCTGCGGTTGGGGGTTCATCAGCCACTACGCCATGACGCAGCACAAAATGAAACATGAACCGGACTATAAACCAGCGCACAAGTTCGTGTGCGACTCGTGCGGTAAAGGTTTCATCTCCAGAGGGAACTTGAAGGTGCACATAAAGCAGCACACTGGGGGCTCTCCGGAATACATCTGCGACTTTTGCGGCAAGGTCCTGTCGACTCGGGACTCGCTGAAGCATCACCGGCGAGTACACACCGGAGAAAAACCTTTTGTTTGTCCGGTGTGTGGCAAAGCTTTCAGTGCCAAGAAATATCTGGACGTTCACCACAGGACACATACAGGGGAGCGACCCTACTCGTGTGAGCTTTGTGGTAAGAGGTACACTCAGAGGTCGACTTTACAGAATCATAAGAAAGTCGCTCACTCTAGTTAG
- Protein Sequence
- MSGTCFDFSRLHLSCFKSLWSLPYRCRKEIVVNNIDSSNASIVLPKEISKKTVSCSSKAKSVKTLKIVVKKGQLMYKRGRGNCAIKLSSCEDVHKCNTCGRGFKRKTTLDYHIMSHSDDRNFDCSICKKKFKRDKDLRKHLTTHNREHMRYFCNSCDYVCNRKSNLELHRVRRHSKEFSFFCDICGKGFCSDSQLRYHRSNKSHTGESQCVCSVCGKTVSNKYNLKVHVQTHTPDKQIVCDVCGKTFTQMSNLKIHYRIHTDSGLILFFTCPCQVANITFSLSLKDIYLNCVRSSADCSRISQEIGASKLSVSQETDIVKFLLIPNKRGSSKIISVDNVVSLSSCQSLICDVCHKEYVSIDSLRRHMKRHREERPFTCNVCTKCFKCKSELVAHQTVHNGNFKFHCEFCRYVSNRKTNLVLHRKRHLKQYSLSCDVCRKEFYSKGDLREHISRHHSGIKPFLCDICGWGFISHYAMTQHKMKHEPDYKPAHKFVCDSCGKGFISRGNLKVHIKQHTGGSPEYICDFCGKVLSTRDSLKHHRRVHTGEKPFVCPVCGKAFSAKKYLDVHHRTHTGERPYSCELCGKRYTQRSTLQNHKKVAHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -