Tpod021714.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000006.1:4730809-4732335[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0028 0.55 12.6 0.5 1 21 13 33 13 34 0.94 2 16 9.1e-06 0.0018 20.4 1.7 2 23 94 115 93 115 0.95 3 16 0.00012 0.022 17.0 0.3 1 23 121 143 121 143 0.98 4 16 2.1e-05 0.004 19.3 4.4 1 23 149 171 149 171 0.98 5 16 2.1e-05 0.004 19.3 4.4 1 23 177 199 177 199 0.98 6 16 2.1e-05 0.004 19.3 4.4 1 23 205 227 205 227 0.98 7 16 1.6e-05 0.0031 19.6 2.8 1 23 233 255 233 255 0.98 8 16 2.1e-05 0.004 19.3 4.4 1 23 261 283 261 283 0.98 9 16 2.1e-05 0.004 19.3 4.4 1 23 289 311 289 311 0.98 10 16 2.1e-05 0.004 19.3 4.4 1 23 317 339 317 339 0.98 11 16 2.1e-05 0.004 19.3 4.4 1 23 345 367 345 367 0.98 12 16 1.6e-05 0.0031 19.6 2.8 1 23 373 395 373 395 0.98 13 16 2.1e-05 0.004 19.3 4.4 1 23 401 423 401 423 0.98 14 16 1.6e-05 0.0031 19.6 2.8 1 23 429 451 429 451 0.98 15 16 1.2e-05 0.0024 20.0 2.0 1 23 457 479 457 479 0.98 16 16 3.4e-05 0.0065 18.6 1.7 1 23 485 507 485 507 0.96
Sequence Information
- Coding Sequence
- atgtatgtgtatattcTGTTACGTTCAGGTGTTGCGTTCCCCTGTCAACATTGCGAAACGGCGTTCACAAGCCCCCTGTTCCTAGAGAAACACGGGAGGTACTGTCGGGGTCTGAGAGCAAAGCTCGCCAAGATACCCGCTGTTGTTGGGAGCAGACCACCAGACCCTAGCGGGACGGGTCCAGACGCCGAGGGGCGCCGCCAACTCCCGTATAGCGTCTGCGAGACGAGTTACACTGGGAGGCGCAGTCTGGCCAAACAAGGTGGCGAGAGAGCTTGTGAATGCTTGGACTGCGGGGCGAGATTTAGATACAACAGTAGCCTAGTAAGACATCGACGTATTCATACAGGAGACAAGCTATTTCAATGCCTGGACTGCGGGGCGAGATTTAGATGGAACAGTAGCCTAGTCAATCATCGACGTATTCATACAGGAGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCGTGCAAAGAGCTCATCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCGTGCAAAGAGCTCATCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCGTGCAAAGAGCTCATCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCACACGCATTGATAGTCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCGTGCAAAGAGCTCATCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCGTGCAAAGAGCTCATCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCGTGCAAAGAGCTCATCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCGTGCAAAGAGCTCATCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCACACGCATTGATAGTCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCGTGCAAAGAGCTCATCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCACACGCATTGATAGTCTTACTAATCATAAACGTACTCACACAGGTGAAAAGCCGTTCCATTGCCAAGAGTGCGGGGCGAAGTTCACACGCATTGATAGTCTTACTAATCATAGACGTATTCACACAGGAGAAAGACCACACGTCTGCGATGTGTGCGAGGCGACATTCTCCCGAAAGGGCCATCTTGTCCGCCACTCTCGCGCCCACAGCTGA
- Protein Sequence
- MYVYILLRSGVAFPCQHCETAFTSPLFLEKHGRYCRGLRAKLAKIPAVVGSRPPDPSGTGPDAEGRRQLPYSVCETSYTGRRSLAKQGGERACECLDCGARFRYNSSLVRHRRIHTGDKLFQCLDCGARFRWNSSLVNHRRIHTGEKPFHCQECGAKFVQRAHLTNHKRTHTGEKPFHCQECGAKFVQRAHLTNHKRTHTGEKPFHCQECGAKFVQRAHLTNHKRTHTGEKPFHCQECGAKFTRIDSLTNHKRTHTGEKPFHCQECGAKFVQRAHLTNHKRTHTGEKPFHCQECGAKFVQRAHLTNHKRTHTGEKPFHCQECGAKFVQRAHLTNHKRTHTGEKPFHCQECGAKFVQRAHLTNHKRTHTGEKPFHCQECGAKFTRIDSLTNHKRTHTGEKPFHCQECGAKFVQRAHLTNHKRTHTGEKPFHCQECGAKFTRIDSLTNHKRTHTGEKPFHCQECGAKFTRIDSLTNHRRIHTGERPHVCDVCEATFSRKGHLVRHSRAHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -